View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11939_high_10 (Length: 311)
Name: NF11939_high_10
Description: NF11939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11939_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 40663417 - 40663113
Alignment:
| Q |
1 |
tatgcggtttcctaagaggttttatacaaacctcaaccttaggtcctaggttgaaagttaggtagtgaaggag--tttggagagtcaaaagagaaaaagt |
98 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
40663417 |
tatgcggtttcctaagaggttt-atacaaacctcaaccttaggtcctaggttgaaagttaggtactgaaggagagtttggagagtcaaaagagaaaaagt |
40663319 |
T |
|
| Q |
99 |
ttgaacagatgatgaccaaccaa----gctggttgtaaacatgagcagatttattacttatacatagtaacatgaaaaacaacaata---ttcattcacg |
191 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40663318 |
ttgaacagatgatgaccaaccaacgaagctggttgtaaacatgagcagatttattacttatacatagtaacatgaaaaacaacaataatattcattcacg |
40663219 |
T |
|
| Q |
192 |
cacgcttgattttcagcacagcgctaccatagcatcacctccaccaatccaatgcatcttctgcattgtattactccttttcatcctcatgggttgctta |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40663218 |
cacgcttgattttcagcacagcgctaccatagcatcacctcctccaatccaatgcatcttctgcattctattactccttttcatcctcatgggttgctta |
40663119 |
T |
|
| Q |
292 |
tacgtc |
297 |
Q |
| |
|
|||||| |
|
|
| T |
40663118 |
tacgtc |
40663113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University