View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11939_high_5 (Length: 491)
Name: NF11939_high_5
Description: NF11939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11939_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 21 - 469
Target Start/End: Original strand, 45423497 - 45423951
Alignment:
| Q |
21 |
catttgatgatgggttttaggccacacgtacagtttcctattccacaaatgggtgatggtgtcacaaacaataacaacgacagagttcagatgtttggtt |
120 |
Q |
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| T |
45423497 |
catttgatgatgggttttaggccacacgtacagtttcctattccacaaatgggtgatggtgtcacaaacaataacaacgacagagttcagatgtttggtt |
45423596 |
T |
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| Q |
121 |
tctccaaccaattaccaccacaaatgtcaattcccaatgcacctttcattcctcctatcattggaaactcttcttcaaccacaccacc------aaccac |
214 |
Q |
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| T |
45423597 |
tctccaaccaattaccaccacaaatgtcaattcccaatgcacctttcattcctcctatcattggaaactcttcttcaaccacaccaccaacaccaaccac |
45423696 |
T |
|
| Q |
215 |
ttttggcaaccagaaccaacctggaagcacatgtggctagtctcattcctcattcctaagaatattatgcaaagactcaaactgtatgcaacaaagaaat |
314 |
Q |
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| T |
45423697 |
ttttggtaaccagaatcaacctggaaggacatgtggctagtctcattcctcattcctaagaatattatgcaaagactcaaaatgtatgcaacaaagaaat |
45423796 |
T |
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| Q |
315 |
cagtttttgtacattaagtacaagatgttaaaattaaaagagacatttgataagttgggacgtgagtttgaaccagctatttctcaattctgtgcaatta |
414 |
Q |
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| T |
45423797 |
cagtttttgtacattaagtacgagatgttaaaattaaaagagacatttgataagttgggacgtgagtttgaaccagctatttctcaattctgtgtaatta |
45423896 |
T |
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| Q |
415 |
gtgtgtgagattcaccaccagcttcttgaaacattaaagaaaagtcaggtttttg |
469 |
Q |
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| T |
45423897 |
gtgtgtgagattcaccaccagcttcttgaaacattaaagaaaagtaaggtttttg |
45423951 |
T |
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