View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11939_low_10 (Length: 320)

Name: NF11939_low_10
Description: NF11939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11939_low_10
NF11939_low_10
[»] chr7 (16 HSPs)
chr7 (17-320)||(4653338-4653641)
chr7 (54-320)||(4845989-4846255)
chr7 (54-320)||(4712049-4712315)
chr7 (51-320)||(4697164-4697433)
chr7 (54-318)||(4666790-4667057)
chr7 (51-320)||(4783809-4784078)
chr7 (51-320)||(4816238-4816507)
chr7 (65-149)||(4672542-4672626)
chr7 (69-316)||(4863792-4864039)
chr7 (54-319)||(4643526-4643791)
chr7 (201-320)||(4636859-4636978)
chr7 (54-149)||(4630782-4630877)
chr7 (101-320)||(4662893-4663112)
chr7 (243-320)||(4630971-4631048)
chr7 (198-313)||(4672675-4672790)
chr7 (54-110)||(4647388-4647444)
[»] chr4 (1 HSPs)
chr4 (51-320)||(18925716-18925985)


Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 320
Target Start/End: Original strand, 4653338 - 4653641
Alignment:
Q  17 gacatcacgatattttgtgtggttagttgctctctgtagcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcaca 116  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4653338 gacatcgcggtattttgtgtggttagttgctctctgtagcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcaca 4653437  T
Q  117 gcataatccttatgaacaggaaccaaacgagcattgctccatgaaatcacgtcagcatttggttcagccaagaaatcatggataaatatctggaaaactc 216  Q
     ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4653438 acataatccttatgaacaggaatcaaacgagcattgctccatgaaatcacatcagcatttggttcagccaagaaatcatgtataaatatctggaaaactc 4653537  T
Q  217 tatcacctttattcttgatacgccaatcaaattcacaaaaatgtaacctgaccatgtaagtaaatgttgagtcaacttcgaaattccaagttacattgta 316  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4653538 tatcacctttatccttgatacgccaatcaaattcacaaaaatgtaacctgaccatataagtaaatgttgagtcaacttcgaaattccaagttacattgta 4653637  T
Q  317 atcc 320  Q
    ||||    
T  4653638 atcc 4653641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 54 - 320
Target Start/End: Complemental strand, 4846255 - 4845989
Alignment:
Q  54 agcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaacgagcattgc 153  Q
    |||||||||| |||||||||||||||||||| || |||||| | || |||||  ||  ||||||||||||||||||||||||||| ||    | ||   |    
T  4846255 agcttgattgaaagattaactctttcaatttcagagcttccattttgagagtagattttcacagcataatccttatgaacaggaatcatgttaccaccac 4846156  T
Q  154 tccatgaaatcacgtcagcatttggttcagccaagaaatcatggataaatatctggaaaactctatcacctttattcttgatacgccaatcaaattcaca 253  Q
    ||||  ||||||| ||||||| | |||||||||| | ||||| |||||||||||| |||||||||||||||||||||||| || ||  |||||| |||||    
T  4846155 tccaaaaaatcacatcagcatatagttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttggtaagcagatcaaactcaca 4846056  T
Q  254 aaaatgtaacctgaccatgtaagtaaatgttgagtcaacttcgaaattccaagttacattgtaatcc 320  Q
    |||||||||||| ||||| ||||||||  | || |||||||||||||||||||||||||| ||||||    
T  4846055 aaaatgtaaccttaccatataagtaaaactagaatcaacttcgaaattccaagttacattataatcc 4845989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 54 - 320
Target Start/End: Complemental strand, 4712315 - 4712049
Alignment:
Q  54 agcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaacgagcattgc 153  Q
    ||||| |||| ||| |||||||||||||||| || |||||| | || ||||| |||  ||||||||||||||||||||||||||| ||    | ||   |    
T  4712315 agcttaattgaaaggttaactctttcaatttcagagcttccattttgagagtacattttcacagcataatccttatgaacaggaatcatgttaccaccac 4712216  T
Q  154 tccatgaaatcacgtcagcatttggttcagccaagaaatcatggataaatatctggaaaactctatcacctttattcttgatacgccaatcaaattcaca 253  Q
    ||||  ||||||| ||||| | | |||||||||| | ||||| |||||||||||| ||||||||||||||||||||||||||| ||  |||||| |||||    
T  4712215 tccagtaaatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcaca 4712116  T
Q  254 aaaatgtaacctgaccatgtaagtaaatgttgagtcaacttcgaaattccaagttacattgtaatcc 320  Q
    |||||||||||| ||||| ||||||||  | || ||||||| |||||||||||||||||| ||||||    
T  4712115 aaaatgtaaccttaccatataagtaaaactagaatcaactttgaaattccaagttacattataatcc 4712049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 51 - 320
Target Start/End: Complemental strand, 4697433 - 4697164
Alignment:
Q  51 tgtagcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaacgagcat 150  Q
    ||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||| |||||||||||||||| | ||| |     
T  4697433 tgtagcttgattgaaagattaagtctttcaatttgagagcttccttcttgagagtgcatagacacagcataatctttatgaacaggaaccataggagtag 4697334  T
Q  151 tgctccatgaaatcacgtcagcatttggttcagccaagaaatcatggataaatatctggaaaactctatcacctttattcttgatacgccaatcaaattc 250  Q
    | ||||| |||||||| ||||| |||   || |||||   || |   || ||||| || || |||||||||||| |||| |||||| ||  |||||| ||    
T  4697333 tactccaagaaatcacatcagcgtttatctccgccaaagtattagctatgaatatttgaaagactctatcacctatatttttgatatgctgatcaaactc 4697234  T
Q  251 acaaaaatgtaacctgaccatgtaagtaaatgttgagtcaacttcgaaattccaagttacattgtaatcc 320  Q
    ||||||||| ||||| ||||| ||||||||       ||||||||||||||||||||||||||| |||||    
T  4697233 acaaaaatgcaaccttaccatataagtaaaaccaacatcaacttcgaaattccaagttacattgaaatcc 4697164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 54 - 318
Target Start/End: Original strand, 4666790 - 4667057
Alignment:
Q  54 agcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaacgagcat--- 150  Q
    ||||| |||| ||||||||||||||||||||||  ||| ||| ||| ||| | ||||||||  ||||||||||||||||||||||||| |||| ||        
T  4666790 agcttaattgaaagattaactctttcaatttgacggctccctccttgagaatccatagtcaaggcataatccttatgaacaggaaccatacgaacaccac 4666889  T
Q  151 tgctccatgaaatcacgtcagcatttggttcagccaagaaatcatggataaatatctggaaaactctatcacctttattcttgatacgccaatcaaattc 250  Q
    | |||||  ||| |||||||||  ||||||||||||  | |||||  ||||| ||||| |||||||||||||||  |||||||||| |||||||||| ||    
T  4666890 tactccaataaagcacgtcagcccttggttcagccataatatcatctataaaaatctgaaaaactctatcacctggattcttgatatgccaatcaaactc 4666989  T
Q  251 acaaaaatgtaacctgaccatgtaagtaaatgttgagtcaacttcgaaattccaagttacattgtaat 318  Q
    ||||||||| ||||| ||||| ||||||||  | || |||||||  |||||||| || ||||| ||||    
T  4666990 acaaaaatgcaaccttaccatataagtaaaaatagaatcaactttaaaattccatgtcacattataat 4667057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 51 - 320
Target Start/End: Complemental strand, 4784078 - 4783809
Alignment:
Q  51 tgtagcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaacgagcat 150  Q
    ||||||||||| | |||||||||| |||||||||||| ||||||  ||| |||   ||||||||| ||||||||||||||||||||||||||| |||||     
T  4784078 tgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaaccaaaggagcac 4783979  T
Q  151 tgctccatgaaatcacgtcagcatttggttcagccaagaaatcatggataaatatctggaaaactctatcacctttattcttgatacgccaatcaaattc 250  Q
      |||||    ||||| ||||||    ||||||||||   |||||  || || ||||| |||| ||||||||| |  |  |||||| |||||||||| ||    
T  4783978 cactccaccttatcacatcagcagcatgttcagccaaactatcatctatgaaaatctgaaaaattctatcaccatcctgtttgatatgccaatcaaactc 4783879  T
Q  251 acaaaaatgtaacctgaccatgtaagtaaatgttgagtcaacttcgaaattccaagttacattgtaatcc 320  Q
    ||||||||||||||| ||||| |||||||| |  || |||||||| || |||||||||||||||||||||    
T  4783878 acaaaaatgtaaccttaccatataagtaaaagcagaatcaacttcaaagttccaagttacattgtaatcc 4783809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 51 - 320
Target Start/End: Complemental strand, 4816507 - 4816238
Alignment:
Q  51 tgtagcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaacgagcat 150  Q
    ||||||||||| | |||||||||| |||||||||||| ||||||  | | |||   ||||||||| ||||||||||||||||||||||| ||| |||||     
T  4816507 tgtagcttgatcgaaagattaactttttcaatttgagagcttccgccatgagaacccatagtcacggcataatccttatgaacaggaacaaaaggagcac 4816408  T
Q  151 tgctccatgaaatcacgtcagcatttggttcagccaagaaatcatggataaatatctggaaaactctatcacctttattcttgatacgccaatcaaattc 250  Q
      |||||  | ||||| ||||||    ||||||||||   |||||  || || ||||| |||| ||||||||| |  |  |||||| |||||||||| ||    
T  4816407 cactccaccatatcacatcagcaaaaagttcagccaaactatcatctatgaaaatctgaaaaattctatcaccatcctgtttgatatgccaatcaaactc 4816308  T
Q  251 acaaaaatgtaacctgaccatgtaagtaaatgttgagtcaacttcgaaattccaagttacattgtaatcc 320  Q
    ||||||||||||||| ||||| |||||||| |  || |||||||| || |||||||||||||||||||||    
T  4816307 acaaaaatgtaaccttaccatataagtaaaagcagaatcaacttcaaagttccaagttacattgtaatcc 4816238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 65 - 149
Target Start/End: Original strand, 4672542 - 4672626
Alignment:
Q  65 aagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaacgagca 149  Q
    ||||||||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||||| |||||||    
T  4672542 aagattaactctttcaatttgagagcttccttcttgagagtacatagtgacagcataatccttatgaacaggaaccatacgagca 4672626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 69 - 316
Target Start/End: Original strand, 4863792 - 4864039
Alignment:
Q  69 ttaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaacgagcattgctccatgaaatcacgt 168  Q
    ||||||||||||||||||| |||||||||||||||||  |||| ||||| ||||||||||||||||||||||| ||||| |  ||||||    ||||| |    
T  4863792 ttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatgaacaggaaccatacgagaaccgctccaccgtatcacat 4863891  T
Q  169 cagcatttggttcagccaagaaatcatggataaatatctggaaaactctatcacctttattcttgatacgccaatcaaattcacaaaaatgtaacctgac 268  Q
    |||| |||   |||||||    || |   || || ||||| ||  ||||||||||||||||  | |||  |  |||||| ||||||||||||||||| ||    
T  4863892 cagcgttttcctcagccatactattaactatgaaaatctgaaaggctctatcacctttatttgttatattcggatcaaactcacaaaaatgtaaccttac 4863991  T
Q  269 catgtaagtaaatgttgagtcaacttcgaaattccaagttacattgta 316  Q
    ||| ||||||||  | || |||||||| ||||||||||||||||||||    
T  4863992 catataagtaaaattagaatcaacttcaaaattccaagttacattgta 4864039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 54 - 319
Target Start/End: Original strand, 4643526 - 4643791
Alignment:
Q  54 agcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaacgagcattgc 153  Q
    |||||||||| ||||||| ||||||||| ||||| ||||||||||| | ||| ||||| ||  |||||||||||||||||||||||||||||||||   |    
T  4643526 agcttgattgaaagattagctctttcaagttgagagcttccttcttgatagtccatagacattgcataatccttatgaacaggaaccaaacgagcaccac 4643625  T
Q  154 tccatgaaatcacgtcagcatttggttcagccaagaaatcatggataaatatctggaaaactctatcacctttattcttgatacgccaatcaaattcaca 253  Q
    ||||    ||||| || || |||  |||| ||||    | ||  || |||||||| || |||||||||||||||||  | |||  |  |||||| |||||    
T  4643626 tccaccctatcacatccgccttttcttcaaccaaagtgttatctatgaatatctgaaagactctatcacctttatttgttatatccggatcaaactcaca 4643725  T
Q  254 aaaatgtaacctgaccatgtaagtaaatgttgagtcaacttcgaaattccaagttacattgtaatc 319  Q
    |||||||||||| ||||| ||||||||    || ||||| || |||||||||||||||||| ||||    
T  4643726 aaaatgtaaccttaccatataagtaaaaccagaatcaacctcaaaattccaagttacattgaaatc 4643791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 201 - 320
Target Start/End: Original strand, 4636859 - 4636978
Alignment:
Q  201 aatatctggaaaactctatcacctttattcttgatacgccaatcaaattcacaaaaatgtaacctgaccatgtaagtaaatgttgagtcaacttcgaaat 300  Q
    |||||||| || ||||||||||||||||  |||||| |||||||||| ||||||||||||||||| ||||| |||||||| |  || |||||||| || |    
T  4636859 aatatctgaaagactctatcacctttatagttgatatgccaatcaaactcacaaaaatgtaaccttaccatataagtaaaagcagaatcaacttcaaagt 4636958  T
Q  301 tccaagttacattgtaatcc 320  Q
    ||||||||||||| ||||||    
T  4636959 tccaagttacattataatcc 4636978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 4630782 - 4630877
Alignment:
Q  54 agcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaacgagca 149  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||  |||| ||||||||||||||  |||||||| |||||||    
T  4630782 agcttgattgaaagattaactctttcaatttgagagcttccttcttgagagtacataagcacaacataatccttatgagtaggaaccatacgagca 4630877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 320
Target Start/End: Original strand, 4662893 - 4663112
Alignment:
Q  101 agagtgcatagtcacagcataatccttatgaacaggaaccaaacgagcattgctccatgaaatcacgtcagcatttggttcagccaagaaatcatggata 200  Q
    ||||| |||||||||| |||||||||||||||||||||||| |||| |||| |||||    ||||| || ||   |  |||| | ||   |||||  |||    
T  4662893 agagtacatagtcacaccataatccttatgaacaggaaccatacgaccattactccaccttatcacatcggctaattcttcaactaaattatcatctata 4662992  T
Q  201 aatatctggaaaactctatcacctttattcttgatacgccaatcaaattcacaaaaatgtaacctgaccatgtaagtaaatgttgagtcaacttcgaaat 300  Q
    || ||||| || | |||||||||||||||  |||||  |  |||||| ||||||||||||||||| |||||||| ||||| |  || ||||| || ||||    
T  4662993 aaaatctgaaacattctatcacctttatttatgatattcggatcaaactcacaaaaatgtaaccttaccatgtatgtaaaagaagaatcaacctcaaaat 4663092  T
Q  301 tccaagttacattgtaatcc 320  Q
    ||||||||||||| ||||||    
T  4663093 tccaagttacattataatcc 4663112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 320
Target Start/End: Original strand, 4630971 - 4631048
Alignment:
Q  243 tcaaattcacaaaaatgtaacctgaccatgtaagtaaatgttgagtcaacttcgaaattccaagttacattgtaatcc 320  Q
    ||||| |||||||||||||| || ||||| |||||||| |  || |||||||| ||||||||||||||||||||||||    
T  4630971 tcaaactcacaaaaatgtaatcttaccatataagtaaaagaagaatcaacttcaaaattccaagttacattgtaatcc 4631048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 313
Target Start/End: Original strand, 4672675 - 4672790
Alignment:
Q  198 ataaatatctggaaaactctatcacctttattcttgatacgccaatcaaattcacaaaaatgtaacctgaccatgtaagtaaatgttgagtcaacttcga 297  Q
    ||||| ||||| ||  ||||||||||| ||||  ||||| |||  ||||| ||||||||||||||||| ||||| ||||| || |  || ||||| || |    
T  4672675 ataaaaatctgaaaggctctatcacctgtattaatgataagcctgtcaaactcacaaaaatgtaaccttaccatataagtgaaagaagaatcaacctcaa 4672774  T
Q  298 aattccaagttacatt 313  Q
    ||||||||||||||||    
T  4672775 aattccaagttacatt 4672790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 4647388 - 4647444
Alignment:
Q  54 agcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcata 110  Q
    |||||||||| |||||||||||||||||||||| | |||||| ||| ||||| ||||    
T  4647388 agcttgattgaaagattaactctttcaatttgattccttcctccttgagagtacata 4647444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 51 - 320
Target Start/End: Complemental strand, 18925985 - 18925716
Alignment:
Q  51 tgtagcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacagcataatccttatgaacaggaaccaaacgagcat 150  Q
    |||||||| |||| |||||||||||||| |||||| | ||||||||||  ||||| |||||||||| |||||||||||||||||||||||| |||||||     
T  18925985 tgtagctttattgaaagattaactcttttaatttgcgagcttccttctcgagagtacatagtcacaacataatccttatgaacaggaaccatacgagcac 18925886  T
Q  151 tgctccatgaaatcacgtcagcatttggttcagccaagaaatcatggataaatatctggaaaactctatcacctttattcttgatacgccaatcaaattc 250  Q
      |||||   |||||| ||||||||| ||||||||||   |||||  ||||| ||||| |||||||||||||||| |||||| ||| |||||||||| ||    
T  18925885 cactccaatgaatcacatcagcatttcgttcagccaaattatcatctataaaaatctgaaaaactctatcaccttgattctttatatgccaatcaaactc 18925786  T
Q  251 acaaaaatgtaacctgaccatgtaagtaaatgttgagtcaacttcgaaattccaagttacattgtaatcc 320  Q
     |||||||| || || ||||  |||||||| |  || |||||||| ||||||||||||||||| ||||||    
T  18925785 gcaaaaatgcaatcttaccaaataagtaaaggcagaatcaacttcaaaattccaagttacattataatcc 18925716  T

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