View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11939_low_13 (Length: 282)
Name: NF11939_low_13
Description: NF11939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11939_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 78 - 268
Target Start/End: Complemental strand, 49784035 - 49783849
Alignment:
| Q |
78 |
cacgagttcaatttaaatttgttcaatttaccatttttctattgtgttgattcaatttgggtgggttcaaataagaattaattcgtaattgttcttggtc |
177 |
Q |
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| T |
49784035 |
cacgagttcaatttaaatttgttcaatttaccatttttctattgtgttgattcaatttgggtgggttcaaataagaattaattcgtaattgttcttggtc |
49783936 |
T |
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| Q |
178 |
aactacgtactagtatttattggtcaactgtgtaattttatttcgaggagctcctaattccataatgttatagaataagtcctaataattg |
268 |
Q |
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| T |
49783935 |
aac----tactagtatttattggtcaactgcgtaattttatttcgaggagctcctaattccataatgttatagaataagtcctaataattg |
49783849 |
T |
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