View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11939_low_16 (Length: 246)
Name: NF11939_low_16
Description: NF11939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11939_low_16 |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 46239102 - 46238872
Alignment:
| Q |
16 |
catcaattccttcacccacagcatagatggcaatctcatctgcaatgttgtctagatcaacttgaacaaagtcattctcaatcctatccattttacacca |
115 |
Q |
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| T |
46239102 |
catcaattccttcacccacagcatagatggcaatctcatctgcaatgttgtctagatcaacttgaacaaagtcattctcaatcctatccattttacacca |
46239003 |
T |
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| Q |
116 |
cagcctaatctcatggtcttgataaccccagctacacacaagttgcctaataacacctactttccaagcatctggaactaagtcagacacaagggtttga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46239002 |
cagcctaatctcatggtcttgataaccccagctacaaacaagttgcctaataacacctactttccaagcatctggaactaagtcagacacaagggtttga |
46238903 |
T |
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| Q |
216 |
accccacctctgtagaatatggtttcttccc |
246 |
Q |
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| T |
46238902 |
accccacctctgtagaatatggtttcttccc |
46238872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 3455555 - 3455786
Alignment:
| Q |
16 |
catcaattccttcacccacagcatagatggcaatctcatctgcaatgttgtctagatcaacttgaacaaagtcattctcaatcctatccattttacacca |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455555 |
catcaattccttcacccacagcatagatggcaatctcatctgcaatgctgtctagatcaacttgaacaaagtcattctcaatcctatccattttacacca |
3455654 |
T |
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| Q |
116 |
cagcctaatctcatggtcttgataaccccagctacacacaagttgcctaataacacctactttccaagcatctggaactaagtcagacacaagggtttga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3455655 |
cagcctaatctcatggtcttgataaccccagctacacacaagttgcctaataacacctactttccaagcatctggaactaagtcagacacaagggtttta |
3455754 |
T |
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| Q |
216 |
a-ccccacctctgtagaatatggtttcttccc |
246 |
Q |
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| T |
3455755 |
acccccacctctgtagaatacggtttcttccc |
3455786 |
T |
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