View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11939_low_3 (Length: 649)

Name: NF11939_low_3
Description: NF11939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11939_low_3
NF11939_low_3
[»] chr4 (1 HSPs)
chr4 (13-633)||(53044918-53045538)
[»] chr2 (1 HSPs)
chr2 (55-192)||(15962489-15962626)


Alignment Details
Target: chr4 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 13 - 633
Target Start/End: Complemental strand, 53045538 - 53044918
Alignment:
Q  13 cacagacacacacattcagaaagaactagnnnnnnntactataaatctttcacctcaacactgttctttccaatccatgttcctataagatgctcctccc 112  Q
    ||||||||||||||||||||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53045538 cacagacacacacattcagaaagaactggaaaaaaatactataaatctttcacctcaacactgttctttccaatccatgttcctataagatgctcctccc 53045439  T
Q  113 tatcttctcctggatatgaatactgaaagatgtagcaatctccgctataaaattttgactggtcagtggctgcgagaagannnnnnncttgaccattcac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  53045438 tatcttctcctggatatgaatactgaaagatgtagcaatctccgctataaaattttgactggtcagtggctgcgagaagatttttttcttgaccattcac 53045339  T
Q  213 acgccaaacctgaggagttatggtataacacttgtcaacaacataaacaattaagcaaaagaaaatgttggaaatgaagtctattattaaaatcacaatc 312  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53045338 acgccaaacctgagaagttatggtataacacttgtcaacaacataaacaattaagcaaaagaaaatgttggaaatgaagtctattattaaaatcacaatc 53045239  T
Q  313 aatccatccaagtaaggataagtacagaacatgtcttttgaaatttctcaagagattttgaatccttaaatccttatgttgtagaatgtgagaaacttaa 412  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  53045238 aattcatccaagtaaggataagtacagaacatgtcttttgaaatttctcaagagattttgaatccttaaatccttatgttgtagaatgtgagaaaattaa 53045139  T
Q  413 ttggaataccaagccaaaaggacgctactcagaatatctttttcaatccttaaataaggttatatacctatcactagtaggagaaataaatcattttaca 512  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  53045138 ttggaataccaagccaaaaggacgctactcagaatagctttttcaatccttaaatgaggttatatacctatcactagtaggagaaataaatcattttaca 53045039  T
Q  513 gttgactggctcctaacttgatcgctagaaaaaatctctaacatagtcttattatggcccctttagtttccattgatttagttttggactgtaaaggaca 612  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53045038 gttgactggctcctaacttaatcgctagaaaaaatctctaacatagtcttattatggcccctttagtttccattgatttagttttggactgtaaaggaca 53044939  T
Q  613 ataccttaccaactggaaact 633  Q
    |||||||||||||||||||||    
T  53044938 ataccttaccaactggaaact 53044918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 55 - 192
Target Start/End: Original strand, 15962489 - 15962626
Alignment:
Q  55 aaatctttcacctcaacactgttctttccaatccatgttcctataagatgctcctccctatcttctcctggatatgaatactgaaagatgtagcaatctc 154  Q
    ||||||||||||||||||||||||||||| ||||| ||||| || |||   || ||| |||||||||| ||||| ||||| ||||||||| |||||||||    
T  15962489 aaatctttcacctcaacactgttctttcctatccacgttccaatgagacagtcgtccttatcttctccaggatacgaatattgaaagatgaagcaatctc 15962588  T
Q  155 cgctataaaattttgactggtcagtggctgcgagaaga 192  Q
    | |||||||||||||| || ||||  |||| |||||||    
T  15962589 cactataaaattttgattgatcagaagctgggagaaga 15962626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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