View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11939_low_4 (Length: 522)
Name: NF11939_low_4
Description: NF11939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11939_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 15 - 512
Target Start/End: Complemental strand, 4755728 - 4755223
Alignment:
| Q |
15 |
agaaagaaatgacttcgtttctttcctttaaagaatgaagttgttgtatttgttcannnnnnnncactaatgtaaaaagtatttcaaacttcccatttca |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
4755728 |
agaaagaaatgacttcgtttctttcctttaaagaatgaagttgttatatttgttaattttttttcactaatgtaaaaagtatttcaaacttcccatttca |
4755629 |
T |
|
| Q |
115 |
acacataaggaagaaaagacnnnnnnnnnnnnncagtgtgtctcataccatgaattcatgcccacctacataaagtttaatctttcattatttaggagcg |
214 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4755628 |
acacataaggaagaaaagaaaaaaaaaag------gtgtgtctcataccatgaattcatgcccacctacataaagtttaatctttcattatttaggagcg |
4755535 |
T |
|
| Q |
215 |
gatttgtatccaactttaaatgatatttcctttgaaaaaacataagttggtttgaggcggttttcatgaacaaaaatgctactaatgcagagactttaat |
314 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| | |
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| T |
4755534 |
gacttgtatccaactttaaatgatatttcctttgaaaaaacataagttggtttgaggcggttttcatgaacata-----tgctaatgcagagactttagt |
4755440 |
T |
|
| Q |
315 |
agttgtttcacttaatttgccgttacaagaatgttgcaataaacaccttctttctt-------------------tctgccattataggtatttttggaa |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4755439 |
agttgtttcacttaatttgccgttacaagaatgttgcaataaacaccttctttcttctttcttcctttctttctttctgccattataggtatttttggaa |
4755340 |
T |
|
| Q |
396 |
aaaatgctacgacgaaatgcttgttatttaggtttaaatatgagtccatacaaatataccttgttatgcttttaggtttcatcatgatgatagaaaaccc |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4755339 |
aaaatgctacgacgaaatgcttgttatttaggtttaaatatgagtccatacaaatataccttgttatgcttttaggtttcatcatgatgatagaaaaccc |
4755240 |
T |
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| Q |
496 |
aatcctaatttcctttg |
512 |
Q |
| |
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||||||||||||||||| |
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| T |
4755239 |
aatcctaatttcctttg |
4755223 |
T |
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