View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11939_low_6 (Length: 459)
Name: NF11939_low_6
Description: NF11939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11939_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 18782197 - 18781772
Alignment:
| Q |
1 |
aacattgttgttatcatcatcattaggatgaaaacaaggatgaataatagaattcatgtcaagataaagattatcatattccacatttgtggtgtttgtg |
100 |
Q |
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| T |
18782197 |
aacattgttgttatcatcatcattaggatgaaaacaaggatgaataatagaattcatgtcaagataaagattatcatattccacatttgtagtgtttgtg |
18782098 |
T |
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| Q |
101 |
ttagggttaatgtcttcaaacacctttggatatttgttgagtaaccatctataaaacgatggaacacccataatcacaacttctcaatatgtttctcttt |
200 |
Q |
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| T |
18782097 |
ttagggttaatgtcttcaaacgcctttggatatttgttgagtaaccatctataaaacgatggaacacccataatcacaacttctcaatatgtttctcttt |
18781998 |
T |
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| Q |
201 |
tgctagggcttgtatttttggtctcagaagattatttgtagtgcttgtaacaatttctcaattttagttttgcaaatgaaacacactcataaatatttat |
300 |
Q |
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| T |
18781997 |
tgctagggcttgtatt------------------tttgtagtgcttgtaacaatttctcaattttagttttgcaaatgaaacacactcataaatatttat |
18781916 |
T |
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| Q |
301 |
gttttggttttaccgaagtagttgttgnnnnnnncagaaacataaccaaacatgattgacatgataagggggagggagtggggtgagaaaatgaagagac |
400 |
Q |
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| T |
18781915 |
gttttggttttaccgaagtagttgttgaaaaaaacagaaacataaccaaacatgattgacatgataagggggagggagtggggtgagaaaatgaagagac |
18781816 |
T |
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| Q |
401 |
tgaataacacgctcggttttagaaatgtaaaagtagttactatt |
444 |
Q |
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| T |
18781815 |
tgaataacacgctcggttttggaaatgtaaaagtagttactatt |
18781772 |
T |
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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 7861562 - 7861506
Alignment:
| Q |
25 |
aggatgaaaacaaggatgaataatagaattcatgtcaagataaagattatcatattc |
81 |
Q |
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| T |
7861562 |
aggatgaaaacaaggatgaatgattccattcatgtcaagatagagattatcatattc |
7861506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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