View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11939_low_7 (Length: 431)
Name: NF11939_low_7
Description: NF11939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11939_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 45 - 379
Target Start/End: Original strand, 8482621 - 8482958
Alignment:
| Q |
45 |
taaaattctctatccaaacacactcttagtgtagtttttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgttcataacaa |
144 |
Q |
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| T |
8482621 |
taaaattctctatccaaacacact--tagaggagtttttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgttcataacaa |
8482718 |
T |
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| Q |
145 |
agtcact-atctttccagactagtggtggcgatctggaacattggaaatactttgtactcatgatgatgttttgatcaacctcttgaatggttactatgt |
243 |
Q |
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| T |
8482719 |
actcacttatctttccagactagtggtggtgatctggaacattggaaatactttgtacttatgatgatgttttgatcaacctcttgaatggttactatgt |
8482818 |
T |
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| Q |
244 |
caaaccg---tcacaaacatttgaagagaaagatcaatcctgccgtgttac-aaacccacaggctgggaatgtttcactgtctttgtcatcttataatct |
339 |
Q |
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||||||| || || ||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8482819 |
caaaccgtactcccacacatttgaagagaaagatcaatcctgcggtattacaaaacccacaggctgggaatgtttcactgtctttgtcatcttagaatct |
8482918 |
T |
|
| Q |
340 |
aatccaacattggaaacatattggaaatcacataaattga |
379 |
Q |
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| T |
8482919 |
aatccaacattggaaacatattggaaatcacataaattga |
8482958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 8 - 184
Target Start/End: Complemental strand, 8355690 - 8355517
Alignment:
| Q |
8 |
caaaggcgattaccaattcatagtataattccccgattaaaattctctatccaaacacactcttagtgtagtttttattctgatcttagtataatttctc |
107 |
Q |
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| T |
8355690 |
caaaggcgattaccaattcatagtataattccccgattaaaattctctatccaaacacacttttagtgtagtttttattct---cttagtataatttctc |
8355594 |
T |
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| Q |
108 |
ttctatttaggaacatcccaaaagttgttcataacaaagtcactatctttccagactagtggtggcgatctggaaca |
184 |
Q |
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| T |
8355593 |
ttctatttaggaacatcccaaaagttgttcataacaaactcactatctttccagactagtggtggcgatctggaaca |
8355517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 246 - 415
Target Start/End: Complemental strand, 8355517 - 8355347
Alignment:
| Q |
246 |
aaccgtcacaaacatttgaagagaaagatcaatcctgccgtgttacaaacccacaggctgggaatgtttcactgtctttgtcatcttataatctaatcca |
345 |
Q |
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||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8355517 |
aaccgtcccacacatttgaagagaaagatcaatcctgcggtgttacaaacccacaggctgggaatgtttcactgtctttgtcatcttagaatctaatcca |
8355418 |
T |
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| Q |
346 |
acattggaaacatattggaaatcacataaattgaataagttaatc-aaaccctcaaattttagaacataat |
415 |
Q |
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| T |
8355417 |
acattggaaacatattggaaatcacataaattgaataagttaatcgaaaccctcaaattttagaacataat |
8355347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 246 - 379
Target Start/End: Complemental strand, 8349464 - 8349331
Alignment:
| Q |
246 |
aaccgtcacaaacatttgaagagaaagatcaatcctgccgtgttacaaacccacaggctgggaatgtttcactgtctttgtcatcttataatctaatcca |
345 |
Q |
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||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8349464 |
aaccgtcccacacatttgaagagaaagatcaatcctgcggtgttacaaacccacaggctgggaatgtttcactgtctttgtcatcttagtatctaatcca |
8349365 |
T |
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| Q |
346 |
acattggaaacatattggaaatcacataaattga |
379 |
Q |
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|||||||||| |||||||||||||||| |||||| |
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| T |
8349364 |
acattggaaaaatattggaaatcacatgaattga |
8349331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 37486059 - 37485994
Alignment:
| Q |
74 |
tgtagtttttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgttcataac |
142 |
Q |
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| T |
37486059 |
tgtagtttttattct---cttagcatagtttctcttccatttatgaacaacccaaaagttgttcataac |
37485994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 382
Target Start/End: Complemental strand, 8350564 - 8350438
Alignment:
| Q |
257 |
acatttgaagagaaagatcaatcctgccgtgttacaaacccacaggctgggaatgtttcactgtctttgtcatcttataatcta--atccaacattggaa |
354 |
Q |
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||||||||||||||| ||||||| || |||| | ||||| |||||| | ||||||||||| |||||||||| || |||||| ||| |||||||||| |
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| T |
8350564 |
acatttgaagagaaatatcaatcatgttgtgtcataaacc-acaggccgtaaatgtttcacttcctttgtcatcctagaatctataatctaacattggaa |
8350466 |
T |
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| Q |
355 |
acatattggaaatcacataaattgaata |
382 |
Q |
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| ||| | ||||||||| ||||||||| |
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| T |
8350465 |
aaatactagaaatcacagcaattgaata |
8350438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 371
Target Start/End: Complemental strand, 8432760 - 8432701
Alignment:
| Q |
312 |
tttcactgtctttgtcatcttataatctaatccaacattggaaacatattggaaatcaca |
371 |
Q |
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|||||||| |||||||||| |||||| |||| |||||| ||||||||||||||||||| |
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| T |
8432760 |
tttcactgcctttgtcatcctataattgaatctaacattaaaaacatattggaaatcaca |
8432701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 36866296 - 36866344
Alignment:
| Q |
97 |
tataatttctcttctatttaggaacatcccaaaagttgttcataacaaa |
145 |
Q |
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||||||||||||| ||||| ||||| || ||||||||||||||||||| |
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| T |
36866296 |
tataatttctctttcatttatgaacaaccaaaaagttgttcataacaaa |
36866344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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