View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11939_low_8 (Length: 385)
Name: NF11939_low_8
Description: NF11939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11939_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 8e-74; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 170 - 339
Target Start/End: Complemental strand, 40663641 - 40663466
Alignment:
| Q |
170 |
ctgcttgaaatcaacatcatttaatctccat------acaacccctaggagattttactaatgctcttgttgccaccattccaccaaattacaacgccgt |
263 |
Q |
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| T |
40663641 |
ctgcttgaaatcaacatcatttaatctctatctctatacaacccctaggagattttactaattctcttgttgccaccattccaccaaattacaacgccgt |
40663542 |
T |
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| Q |
264 |
gactagctatttaatgtacttgggtttagttggccttgatcagcatttgctggtaagtgcttaattaatttcctaa |
339 |
Q |
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| T |
40663541 |
gactagctatttaatgtacttgggtttagttggccttgatcagcatttgctagtaagtgcttaattaatttcctaa |
40663466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 40663787 - 40663663
Alignment:
| Q |
19 |
aggtttatatctaaaataatagaatatctaaatacgtggacatttctattattgaaaataatttgcacgttgatagatgttggatcatgattggacatac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
40663787 |
aggtttatatctaaaataatagaatatctaaatacgtgcacatttctattattgaaaataatttgcacgtcgatagacgttggatcatgattggacatac |
40663688 |
T |
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| Q |
119 |
aaattatgagtctaagtttttattt |
143 |
Q |
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| T |
40663687 |
aaattatgagtctaagtttttattt |
40663663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 40663821 - 40663789
Alignment:
| Q |
20 |
ggtttatatctaaaataatagaatatctaaata |
52 |
Q |
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| T |
40663821 |
ggtttatatctaaaataatagaatatctaaata |
40663789 |
T |
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