View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11939_low_9 (Length: 352)
Name: NF11939_low_9
Description: NF11939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11939_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 155 - 326
Target Start/End: Complemental strand, 48068045 - 48067861
Alignment:
| Q |
155 |
ttctattgaccaaactattctgagactgacggagaaaatgtttttgtgcatgactagccacctgggttggtg-------------aaaatctcaagatat |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
48068045 |
ttctattgaccaaactattctgagactgacggagaaaatgtttttgtgcatgactagccacctgggttggtgtttttgttgttacaaaatctctagatat |
48067946 |
T |
|
| Q |
242 |
acctctccagttacccttcccaagcttctcaagtcctctaagaagtatcatgtgctcctcctcggtccacggcatacctgatcac |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48067945 |
acctctccagttacccttcccaagcttctcaagtcctctaagaaatatcatgtgctcctcctcggtccacggcatacctgatcac |
48067861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 48068556 - 48068434
Alignment:
| Q |
1 |
cttgcaaatgtcaagacctcaaatcactccattatattctttattttaaaatatggtacactttccattctctattttatttcatgaaattcaatgctac |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48068556 |
cttgcaaatgtcaagacctcaaatcattccattatattctttattttaaaatatggtatactttccattctctattttatttcatgaaattcaatgctac |
48068457 |
T |
|
| Q |
101 |
ataaattagcacaactgttccaa |
123 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
48068456 |
ataaattagcacaactgttccaa |
48068434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University