View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1193_high_1 (Length: 521)
Name: NF1193_high_1
Description: NF1193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1193_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 65 - 511
Target Start/End: Complemental strand, 50786574 - 50786108
Alignment:
| Q |
65 |
gagattgtgtatataaatgttaa--tctgaaagttgatgccgaaactggcaagttgcagaaaaaatttcagnnnnnnnatcccttttgaaatcaagacat |
162 |
Q |
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| T |
50786574 |
gagattgtgtatataaatgttaaaatctgaaagttgatgccgaaactggcaagttgcagaaaaaatttcagcccccccatcccttttgaaatcaagacat |
50786475 |
T |
|
| Q |
163 |
gtgacatgtatgtctagccagttttatctcaaaagtaaaataaaattttcaacaatttaagcagttattctgaaaagtattagagcatttaaaaatggat |
262 |
Q |
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| T |
50786474 |
gtgacatgtatgtctagccagttttatctcaaaagtaaaataaaattttcaacaatttaagcagttattctgaaaagtattagagcatttaaaaatggat |
50786375 |
T |
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| Q |
263 |
aaaattgttgataataacagcggtaaccattttacaattgttctcgtatcgatttgaagtctgttacataaaattataaagtcaaattcttaccattgag |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
50786374 |
aaaattgttgataataacagcggtaaccattttacaattgttttcgtatcgatttgaagtctgttacataaaattataaagtcaaattcttaccgttgag |
50786275 |
T |
|
| Q |
363 |
cgaccaactattattatacctagctaaatgattttcctt---------------ttgttacagtttgtcatcacataatggatatattgcaattagaaac |
447 |
Q |
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| T |
50786274 |
cgaccaactattgttatacctagctaaatgattttcctttcatacaattttttcttgttacagtttgtcatcacataatggatatatttcaattagaaac |
50786175 |
T |
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| Q |
448 |
tgaatttg---taaatgtgattaatattgcaggagagacagtttcataactcacagagccttctgtg |
511 |
Q |
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| T |
50786174 |
tgaatttgtaataaatgtgattaatattgcaggagagacagtttcataactcacagagccttctgtg |
50786108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 511
Target Start/End: Original strand, 4160887 - 4160928
Alignment:
| Q |
470 |
attgcaggagagacagtttcataactcacagagccttctgtg |
511 |
Q |
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| T |
4160887 |
attgcagaagggacagtttcatcactcacagagccttctgtg |
4160928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 474 - 511
Target Start/End: Original strand, 42898914 - 42898951
Alignment:
| Q |
474 |
caggagagacagtttcataactcacagagccttctgtg |
511 |
Q |
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| T |
42898914 |
caggagggacagtttcataactcacagagccttctgtg |
42898951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 511
Target Start/End: Complemental strand, 30517400 - 30517362
Alignment:
| Q |
473 |
gcaggagagacagtttcataactcacagagccttctgtg |
511 |
Q |
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| T |
30517400 |
gcaggagagacagcttcataactcacagagccttttgtg |
30517362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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