View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1193_high_18 (Length: 264)
Name: NF1193_high_18
Description: NF1193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1193_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 7 - 253
Target Start/End: Complemental strand, 2005414 - 2005168
Alignment:
| Q |
7 |
aaaatctatccttcaaactcttccatcaaacatcaaccatacttttcttccacctgtgaaccctaatgacttaccacaagggactaccatggaaagccaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2005414 |
aaaatctatccttcaaactcttccatcaaacatcaaccatacttttcttccacctgtgaaccctaatgacctaccacaagggactaccatggaaagccaa |
2005315 |
T |
|
| Q |
107 |
atgcacctcacactgaataactctctcccatatttacatcaggctttgaagtctttggctaaagaaattccccttgtggccttggtggttgattgttttg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2005314 |
atgcacctcacactgaataactctctcccatatttacatcaggctttgaagtctttggctaaagaaattccccttgtggccttggtggttgattgttttg |
2005215 |
T |
|
| Q |
207 |
catttgaagcactgagtattggtaaggaattcaacatgttgtcctat |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2005214 |
catttgaagcactgagtattggtaaggaattcaacatgttgtcctat |
2005168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 2008794 - 2008552
Alignment:
| Q |
7 |
aaaatctatccttcaaactcttccatcaaacatcaaccatacttttcttccacctgtgaaccctaatgacttaccacaagggactaccatggaaagccaa |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
2008794 |
aaaatctatccttcaaactcttccatcaaacatcaaccacacttttcttccacctgtgaaccccaatgacctaccacaagggactaccatggaaagccaa |
2008695 |
T |
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| Q |
107 |
atgcacctcacactgaataactctctcccatatttacatcaggctttgaagtctttggctaaagaaattccccttgtggccttggtggttgattgttttg |
206 |
Q |
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|| | ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
2008694 |
attctcctcacactgactaactctctcccatatttacatcagggattgaagtctttggctaaagaaattccccttgtggccttagtggttgatgcttttt |
2008595 |
T |
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| Q |
207 |
catttgaagcactgagtattggtaaggaattcaacatgttgtc |
249 |
Q |
| |
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| T |
2008594 |
ctgttgaagtactaaatattggtaaggaactcaacatgttgtc |
2008552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 1968221 - 1968468
Alignment:
| Q |
7 |
aaaatctatccttcaaactcttccatcaaacatcaaccatacttttcttccacctgtgaaccctaatgacttaccacaagggactaccatggaaagccaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||| |
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| T |
1968221 |
aaaatctatccttcaaactcttccatcaaacatcaaccacacttttcttccacctgtgaatcccaatgacctaccacaagggactaccatggaaagccaa |
1968320 |
T |
|
| Q |
107 |
atgcacctcacactgaataactctctcccatatttacatcaggctttgaagtctttggctaaagaaattccccttgtggccttggtggttgattgttttg |
206 |
Q |
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||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||| ||| |||||||||||||||||||||| ||||| |
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| T |
1968321 |
atgttcctcacactgaataactctctcccatatttacacgacgctttgaagtctttggctatagaaagtcctcttgtggccttggtggttgattcttttg |
1968420 |
T |
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| Q |
207 |
catttgaagcactgagtattggtaaggaattcaacatgttgtcctatg |
254 |
Q |
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| |||||| ||| | ||||||||||||| ||||||||||||| |||| |
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| T |
1968421 |
ctgttgaagtactaaatattggtaaggaactcaacatgttgtcttatg |
1968468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 253
Target Start/End: Complemental strand, 2012323 - 2012163
Alignment:
| Q |
93 |
ccatggaaagccaaatgcacctcacactgaataactctctcccatatttacatcaggctttgaagtctttggctaaagaaattccccttgtggccttggt |
192 |
Q |
| |
|
||||||||| |||||| || |||||| | | ||| |||||||||||||| ||| |||| ||||||||| | ||| | |||||||||||||||||||| |
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| T |
2012323 |
ccatggaaatccaaattcagctcacagttactaattctctcccatatttgcatgaggcattgaagtctcttgctttaaggattccccttgtggccttggt |
2012224 |
T |
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| Q |
193 |
ggttgattgttttgcatttgaagcactgagtattggtaaggaattcaacatgttgtcctat |
253 |
Q |
| |
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||||||| |||||| |||||||||| | ||| ||| ||||||||||||||||||||| |
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| T |
2012223 |
ggttgatgcttttgctgttgaagcactaaactttgctaaagaattcaacatgttgtcctat |
2012163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 2015801 - 2015726
Alignment:
| Q |
14 |
atccttcaaactcttccatcaaacatcaaccatacttttcttccacctgtgaaccctaatgacttaccacaaggga |
89 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||| |||||| | |||||| |||||||||||| |
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| T |
2015801 |
atccttcaaactcttccatcaaacatcagctgtacttttcttccaccagtgaactccaatgacctaccacaaggga |
2015726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 1962635 - 1962702
Alignment:
| Q |
21 |
aaactcttccatcaaacatcaaccatacttttcttccacctgtgaaccctaatgacttaccacaaggg |
88 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||| |||||| |||||||| ||||||||||| |
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| T |
1962635 |
aaactcttccatcaaacatcagctgtacttttcttccaccagtgaactctaatgacctaccacaaggg |
1962702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 2019180 - 2019109
Alignment:
| Q |
18 |
ttcaaactcttccatcaaacatcaaccatacttttcttccacctgtgaaccctaatgacttaccacaaggga |
89 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| | |||| | | || |||||||||||||||| |
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| T |
2019180 |
ttcaaactcttccatcaaacatcaactgtacttttcttccatcagtgagctccaaagacttaccacaaggga |
2019109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 18189593 - 18189831
Alignment:
| Q |
14 |
atccttcaaactcttccatcaaacatcaaccatacttttcttccacctgtgaaccctaatgacttaccacaagggactaccatggaaagccaaatgcacc |
113 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | ||||||||||| || | ||| ||||| |||| ||| ||||| || |||||| |||||| || | |
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| T |
18189593 |
atccttcaaactcttccatcaaatatcaaccacatgtttcttccaccggttcaacctgatgacctacctcaa-ggactgccttggaaatccaaattcagc |
18189691 |
T |
|
| Q |
114 |
tcacactgaataactctctcccatatttacatcaggctttgaagtctttggctaaagaaattccccttgtggccttggtggttgattgttttgcatttga |
213 |
Q |
| |
|
||||| | | ||| |||||||||||||||||| |||| |||||| || | ||| | | |||||||||||||||||||||| || |||||| | || |
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| T |
18189692 |
tcacagttactaattctctcccatatttacatgaggcattgaagactcttgctttatggactccccttgtggccttggtggttcatgcttttgctgtcga |
18189791 |
T |
|
| Q |
214 |
agcactgagtattggtaaggaattcaacatgttgtcctat |
253 |
Q |
| |
|
|||||| | || ||| |||||||||||||| |||||| |
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|
| T |
18189792 |
agcactaaactatgctaaagaattcaacatgttatcctat |
18189831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 5901808 - 5901885
Alignment:
| Q |
15 |
tccttcaaactcttccatcaaacatcaaccatacttttcttccacctgtgaaccctaatgacttaccacaagggacta |
92 |
Q |
| |
|
||||||||||||||||||||||||| | | |||||||||||||||||||| || || ||| |||| |||||||||| |
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|
| T |
5901808 |
tccttcaaactcttccatcaaacattggctacacttttcttccacctgtgaatcccaacgacctacctcaagggacta |
5901885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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