View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1193_high_2 (Length: 498)
Name: NF1193_high_2
Description: NF1193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1193_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 29 - 442
Target Start/End: Original strand, 42342343 - 42342756
Alignment:
| Q |
29 |
actgacaaggatcatgcttcttttattcttcaggctgaactcgagaggagaagaagacaacaggtaaccaatgatggtctaaactataattagccataga |
128 |
Q |
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| T |
42342343 |
actgacaaggatcatgcttcttttattcttcaggctgaactcgagaggagaagaagacaacaggtaaccaatgatggtctaaactataattagccataga |
42342442 |
T |
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| Q |
129 |
aaatttagagacattaaaactccttttattttgaatcaaatggattgaaatcaaatctaaattactgtcttatgattatctcatgcagtgtttagaggaa |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42342443 |
aaatttagagacattaaaactccttttattttgaatcaaatggattgaaatcaaatctaaattactgtcttatgattatctcatgcagtgttcagaggaa |
42342542 |
T |
|
| Q |
229 |
acaaacgtgagagttcaaacgaaagctcagaaagcaaaagagaaactgagaggcttaagaaggaatacaagttgtcatctgtgaagaaaacatcacatgg |
328 |
Q |
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| T |
42342543 |
acaaacgtgagagttcaaacgaaagctcagaaagcaaaagagaaactgagaggcttaagaaggaatacaagttgtcatctgtgaagaaaacatcacatgg |
42342642 |
T |
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| Q |
329 |
taaagagtgaaatccttgatgcataagtgcatcttcttgtgtagttaaaactgagaaaagtgcacatgatgcagatcaagaaccaagaagaatatactaa |
428 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342643 |
tagagagtgaaatccttgatgcataagtgcatcttcttgtgtagttaaaactgagaaaagtgcacatgatgcagatcaagaaccaagaagaatatactaa |
42342742 |
T |
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| Q |
429 |
agtcaaaaccagtc |
442 |
Q |
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| T |
42342743 |
agtcaaaaccagtc |
42342756 |
T |
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