View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1193_high_23 (Length: 235)
Name: NF1193_high_23
Description: NF1193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1193_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 31386266 - 31386065
Alignment:
| Q |
11 |
gtatcataggtaatcccttgcaactaatgctccttgatataggatggtgttaaatatagaaatgtgctcacatgagaaacaactggtgctgtggattcta |
110 |
Q |
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| T |
31386266 |
gtatcataggtaatcccttgcaactaatgctccttgatataggatggtgt-aaatataggaatgtgctcacatgagaaacaactggtgctgtggattcta |
31386168 |
T |
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| Q |
111 |
gtattgtcaaatcatgattatagctaggtggaatttgaacaaataatagttaatgttttgtgatagttatttagttcaaagtgttgtcaaataacagcta |
210 |
Q |
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| T |
31386167 |
gtattgtcaaatcatgattatagctaggtggaatttgaaca---aatagttaatgttttgtgatagttatttagttcaaagtgttgtcaaataacagcta |
31386071 |
T |
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| Q |
211 |
tagaac |
216 |
Q |
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|||||| |
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| T |
31386070 |
tagaac |
31386065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 14399834 - 14399884
Alignment:
| Q |
164 |
tgttttgtgatagttatttagttcaaagtgttgtcaaataacagctataga |
214 |
Q |
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| T |
14399834 |
tgttttgtgatagctatttagtacaaagtgttgtcaaatagcagctataga |
14399884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 5048525 - 5048561
Alignment:
| Q |
177 |
ttatttagttcaaagtgttgtcaaataacagctatag |
213 |
Q |
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| T |
5048525 |
ttatttagtacaaagtgttgtcaaataacagttatag |
5048561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 31235242 - 31235209
Alignment:
| Q |
179 |
atttagttcaaagtgttgtcaaataacagctata |
212 |
Q |
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| T |
31235242 |
atttagttcaaagtgttgtcaaatagcagctata |
31235209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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