View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1193_high_5 (Length: 412)
Name: NF1193_high_5
Description: NF1193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1193_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 63 - 342
Target Start/End: Complemental strand, 42834973 - 42834694
Alignment:
| Q |
63 |
aattgtattttcatttttgacaaacttgcaatatcaaaattcagttcatctttctccaaagagaacttagcttgcaaatcaagcatttcagagttcaatt |
162 |
Q |
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| T |
42834973 |
aattgtattttcatttttgacaaacttgcaatatcaaaattcagttcatctttctccaaagagaacttagcttgcaaatcaagcatttccgagttcaatt |
42834874 |
T |
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| Q |
163 |
tttgcacatcttgcttatggttagtttcattatcctcatacactgtaaccaaatctcctagcatttgattcttctttctctctgaaaccagctccaattc |
262 |
Q |
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| T |
42834873 |
tttgcacatcttgcttatgtttagtttcattatcctcatacactgtaaccaaatctcctagcatttgactcttctttctctctgaaaccagctccaattc |
42834774 |
T |
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| Q |
263 |
tgatttagccatattttccagtgccactttaagctgaccttgcaattgatgagtttcatgtgacttactccgcagttcat |
342 |
Q |
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| T |
42834773 |
tgatttagccatattttccagtgccactttaagctgaccttgcaattgatgagtttcatgtgacttactccgcagttcat |
42834694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 333
Target Start/End: Complemental strand, 42819650 - 42819561
Alignment:
| Q |
244 |
ctgaaaccagctccaattctgatttagccatattttccagtgccactttaagctgaccttgcaattgatgagtttcatgtgacttactcc |
333 |
Q |
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| T |
42819650 |
ctgaaactaactccaattttgatatagccatattttcctgtgccactttaagctgaccttccaattgataagtctcagatgacttactcc |
42819561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 63 - 181
Target Start/End: Complemental strand, 42843824 - 42843706
Alignment:
| Q |
63 |
aattgtattttcatttttgacaaacttgcaatatcaaaattcagttcatctttctccaaagagaacttagcttgcaaatcaagcatttcagagttcaatt |
162 |
Q |
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| T |
42843824 |
aattgtattttcatgtttgacaaacttgtaatattagaattcagcttacctttctcagaagagaacttagtctgccaattatgcattttagacatcaatt |
42843725 |
T |
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| Q |
163 |
tttgcacatcttgcttatg |
181 |
Q |
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| T |
42843724 |
tttgcacctctttcttatg |
42843706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 42819734 - 42819689
Alignment:
| Q |
148 |
tttcagagttcaatttttgcacatcttgcttatggttagtttcatt |
193 |
Q |
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| T |
42819734 |
tttccgagttcaatttttgcacatcttggttatggttagtttcatt |
42819689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 332
Target Start/End: Complemental strand, 42843654 - 42843576
Alignment:
| Q |
254 |
ctccaattctgatttagccatattttccagtgccactttaagctgaccttgcaattgatgagtttcatgtgacttactc |
332 |
Q |
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| T |
42843654 |
ctccaattctaatttagcaatattgttttgtgctgcttcaagctgactttgcaattgacgagtatcatgtgacttactc |
42843576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 181
Target Start/End: Original strand, 7363780 - 7363898
Alignment:
| Q |
63 |
aattgtattttcatttttgacaaacttgcaatatcaaaattcagttcatctttctccaaagagaacttagcttgcaaatcaagcatttcagagttcaatt |
162 |
Q |
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| T |
7363780 |
aattgtattttcatgtttgacaaacatgcaatattaaaattcaactcccctttctcagaagagaacttagtctgccaattatgcatttcagacatcaatt |
7363879 |
T |
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| Q |
163 |
tttgcacatcttgcttatg |
181 |
Q |
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| T |
7363880 |
tttgcacctctttcttatg |
7363898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 322
Target Start/End: Original strand, 7363950 - 7364018
Alignment:
| Q |
254 |
ctccaattctgatttagccatattttccagtgccactttaagctgaccttgcaattgatgagtttcatg |
322 |
Q |
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| T |
7363950 |
ctccaattctaatttagcaatattttttagtgccgctttaagctgactttgcaatagatgagtatcatg |
7364018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 12622366 - 12622306
Alignment:
| Q |
108 |
tcatctttctccaaagagaacttagcttgcaaatcaagcatttcagagttcaatttttgca |
168 |
Q |
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| T |
12622366 |
tcatctttctccaaagagaacttagcctccaaatcaaacatgtgagagttcaatttttgca |
12622306 |
T |
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