View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1193_high_6 (Length: 394)

Name: NF1193_high_6
Description: NF1193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1193_high_6
NF1193_high_6
[»] chr2 (11 HSPs)
chr2 (101-316)||(30836030-30836245)
chr2 (1-94)||(30836283-30836376)
chr2 (38-78)||(18693662-18693702)
chr2 (39-94)||(24579652-24579707)
chr2 (39-94)||(25186226-25186281)
chr2 (44-94)||(37852037-37852087)
chr2 (14-75)||(7350543-7350604)
chr2 (41-94)||(20200729-20200782)
chr2 (41-94)||(35728923-35728976)
chr2 (41-94)||(38904085-38904138)
chr2 (14-94)||(20565059-20565139)
[»] chr7 (5 HSPs)
chr7 (10-86)||(33473513-33473589)
chr7 (39-94)||(3830090-3830145)
chr7 (8-94)||(27462420-27462506)
chr7 (8-78)||(27833401-27833471)
chr7 (9-78)||(8237632-8237701)
[»] chr4 (10 HSPs)
chr4 (10-86)||(38453258-38453334)
chr4 (10-94)||(50362123-50362207)
chr4 (9-94)||(7230272-7230357)
chr4 (41-94)||(30893413-30893466)
chr4 (44-94)||(18094432-18094482)
chr4 (8-78)||(21449898-21449968)
chr4 (9-94)||(2649717-2649802)
chr4 (8-77)||(10303512-10303581)
chr4 (11-79)||(20799393-20799461)
chr4 (10-94)||(49473638-49473722)
[»] chr1 (9 HSPs)
chr1 (10-78)||(5907792-5907860)
chr1 (9-94)||(24740824-24740909)
chr1 (11-78)||(25532967-25533034)
chr1 (28-94)||(17283962-17284028)
chr1 (24-94)||(45190253-45190323)
chr1 (7-60)||(15803255-15803308)
chr1 (9-77)||(1794588-1794656)
chr1 (38-94)||(9929215-9929271)
chr1 (39-79)||(27449444-27449484)
[»] chr3 (9 HSPs)
chr3 (39-94)||(51882184-51882239)
chr3 (10-94)||(1149053-1149137)
chr3 (39-91)||(10102821-10102873)
chr3 (39-91)||(10213744-10213796)
chr3 (8-60)||(10926460-10926512)
chr3 (39-86)||(41817521-41817568)
chr3 (39-94)||(45431970-45432025)
chr3 (24-77)||(759595-759648)
chr3 (28-68)||(23525131-23525171)
[»] chr5 (7 HSPs)
chr5 (8-94)||(37932321-37932407)
chr5 (15-94)||(27086076-27086155)
chr5 (24-94)||(16752486-16752556)
chr5 (11-60)||(16089444-16089493)
chr5 (10-78)||(6624769-6624837)
chr5 (10-94)||(27219281-27219365)
chr5 (37-77)||(31280039-31280079)
[»] chr8 (7 HSPs)
chr8 (10-94)||(13286124-13286207)
chr8 (10-86)||(15020754-15020830)
chr8 (11-93)||(18533663-18533745)
chr8 (39-92)||(8881297-8881350)
chr8 (43-96)||(8999873-8999926)
chr8 (8-60)||(23852902-23852954)
chr8 (10-94)||(36781401-36781485)
[»] chr6 (3 HSPs)
chr6 (8-79)||(31971520-31971591)
chr6 (39-78)||(32524420-32524459)
chr6 (41-94)||(18253323-18253376)
[»] scaffold0011 (1 HSPs)
scaffold0011 (9-78)||(185255-185324)


Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 101 - 316
Target Start/End: Complemental strand, 30836245 - 30836030
Alignment:
Q  101 tgtgatttgatatataaattgtcttttaaaacattatatatgatatgtcaaacccaaaataatatcgaagattaaattagagattgaaaaaattgaaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30836245 tgtgatttgatatataaattgtcttttaaaacattatatatgatatgtcaaacccaaaataatatcgaagattaaattagagattgaaaaaattgaaatt 30836146  T
Q  201 gatattcaattgataaatttgatgcttttctgtcataaattcaactgtttagtattattaatttaatttttgtatattcttaatatactatatagcttgt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| | ||    
T  30836145 gatattcaattgataaatttgatgcttttctgtcataaattcaactatttggtattattaatttaatttttgtatattcttaatatactatatagttggt 30836046  T
Q  301 aaatcatggtgttagt 316  Q
    ||||||||||||||||    
T  30836045 aaatcatggtgttagt 30836030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 30836376 - 30836283
Alignment:
Q  1 cttctgatttgtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    |||||||||||||||||||||| ||| ||||| ||||  ||||||||||||||| | |||||| |||||||||||||||  |||||||||||||    
T  30836376 cttctgatttgtcctcgtaagcttagctcagttggcagagacaatgcataatatttacaaaattcagggttcaaaccctgaccaccgcaaaaaa 30836283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 18693702 - 18693662
Alignment:
Q  38 aggacaatgcataatatctgcaaaatccagggttcaaaccc 78  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  18693702 aggacaatgcataatatatgcaagatccagggttcaaaccc 18693662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 24579707 - 24579652
Alignment:
Q  39 ggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    |||||||||||||||| |||||  |||||||||||||| || |||||| |||||||    
T  24579707 ggacaatgcataatatatgcaaggtccagggttcaaactctggccaccacaaaaaa 24579652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 25186281 - 25186226
Alignment:
Q  39 ggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    |||||||||||||||| |||||  ||| |||||||||||| ||||||| |||||||    
T  25186281 ggacaatgcataatatatgcaaggtccggggttcaaaccccagccaccacaaaaaa 25186226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 37852037 - 37852087
Alignment:
Q  44 atgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    ||||||||||| |||||  |||||||||||||||||| ||||| |||||||    
T  37852037 atgcataatatatgcaaggtccagggttcaaaccctaaccaccacaaaaaa 37852087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 7350543 - 7350604
Alignment:
Q  14 ctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaa 75  Q
    ||||||||| ||| ||||| || | |||||||||||||||| |||||| || ||||||||||    
T  7350543 ctcgtaagcttagctcagttggtatggacaatgcataatatatgcaaagtctagggttcaaa 7350604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 20200729 - 20200782
Alignment:
Q  41 acaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    |||||||||||||| |||||  ||||||||||||||||  |||||| |||||||    
T  20200729 acaatgcataatatatgcaaggtccagggttcaaaccccggccaccacaaaaaa 20200782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 35728923 - 35728976
Alignment:
Q  41 acaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    |||||||||||||| || ||| ||||||||||||| |||| ||||| |||||||    
T  35728923 acaatgcataatatatgtaaagtccagggttcaaatcctaaccaccacaaaaaa 35728976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 38904085 - 38904138
Alignment:
Q  41 acaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    |||||||||||||| |||||  | |||||||||||||||| ||||| |||||||    
T  38904085 acaatgcataatatatgcaaggttcagggttcaaaccctaaccaccacaaaaaa 38904138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 20565139 - 20565059
Alignment:
Q  14 ctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    ||||| ||| ||| ||||| || | |||||||||||||||| |||||  ||| |||||||||||| | ||||| |||||||    
T  20565139 ctcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtccggggttcaaaccccaaccaccacaaaaaa 20565059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 33473589 - 33473513
Alignment:
Q  10 tgtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccacc 86  Q
    ||||||||| ||  |||||||||| |||||||||||||||||||| |||||  |||||||||| |||||| ||||||    
T  33473589 tgtcctcgtgagtttagttcagtcagcaaggacaatgcataatatatgcaaggtccagggttccaaccctggccacc 33473513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 3830090 - 3830145
Alignment:
Q  39 ggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    |||||||||||||||| |||||  |||||||||||||||| ||||||| |||||||    
T  3830090 ggacaatgcataatatatgcaaggtccagggttcaaaccccagccaccacaaaaaa 3830145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 27462506 - 27462420
Alignment:
Q  8 tttgtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    ||||||||||| ||| ||| ||||| || | |||||||||||||||| |||||  ||| ||||||||||||  |||||| |||||||    
T  27462506 tttgtcctcgtgagcatagctcagttggtatggacaatgcataatatatgcaaggtccggggttcaaaccccggccaccacaaaaaa 27462420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 27833471 - 27833401
Alignment:
Q  8 tttgtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 78  Q
    ||||||||||||||| ||| ||||| || |||||||||||||||||| || ||  ||| ||||||||||||    
T  27833471 tttgtcctcgtaagcctagctcagttggtaaggacaatgcataatatatgtaaggtccggggttcaaaccc 27833401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 8237701 - 8237632
Alignment:
Q  9 ttgtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 78  Q
    |||||||||| ||| |||||| || || |||||||||||||||||| | |||| |||  |||||||||||    
T  8237701 ttgtcctcgtgagcttagttctgttggtaaggacaatgcataatatatacaaagtccgaggttcaaaccc 8237632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 38453258 - 38453334
Alignment:
Q  10 tgtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccacc 86  Q
    ||||||||| ||| ||| ||||| |||| |||||||||||||||| |||||  |||||||||| ||||| |||||||    
T  38453258 tgtcctcgtgagcttagctcagttggcatggacaatgcataatatatgcaaggtccagggttcgaaccccagccacc 38453334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 50362207 - 50362123
Alignment:
Q  10 tgtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    ||||||||| ||| ||| ||||| || | |||||||||||||||| |||||  ||||||||||||||| | |||||| |||||||    
T  50362207 tgtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtccagggttcaaaccttggccaccacaaaaaa 50362123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 7230272 - 7230357
Alignment:
Q  9 ttgtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    |||||||||| ||| ||| ||||| || |||||||||||||||||| |||||  ||| |||||||||||   |||||| |||||||    
T  7230272 ttgtcctcgtgagcttagctcagttggtaaggacaatgcataatatatgcaaggtccggggttcaaacctcggccaccacaaaaaa 7230357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 30893466 - 30893413
Alignment:
Q  41 acaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    ||||||||| |||| |||||| |||| ||||||||||| |||||||||||||||    
T  30893466 acaatgcatgatatatgcaaagtccacggttcaaaccccagccaccgcaaaaaa 30893413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 18094432 - 18094482
Alignment:
Q  44 atgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    ||||||||||| |||||  |||||||||||||||||| ||||| |||||||    
T  18094432 atgcataatatatgcaaggtccagggttcaaaccctaaccaccacaaaaaa 18094482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 21449968 - 21449898
Alignment:
Q  8 tttgtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 78  Q
    ||||||||||| ||| ||| ||||||| || | ||||||||| |||| |||||  ||||||||||||||||    
T  21449968 tttgtcctcgtgagcttagctcagtcgacaggaacaatgcatgatatatgcaaggtccagggttcaaaccc 21449898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 2649802 - 2649717
Alignment:
Q  9 ttgtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    |||||| ||||||  ||| ||||| || | |||||||||||||||| |||||  ||| | |||| ||||||||||||| |||||||    
T  2649802 ttgtccccgtaagtttagctcagttggtagggacaatgcataatatatgcaaggtccggagttcgaaccctagccaccacaaaaaa 2649717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 10303581 - 10303512
Alignment:
Q  8 tttgtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaacc 77  Q
    ||||||||||| ||| ||| ||||| || ||||||||||||||| || ||||| |||| |||||| ||||    
T  10303581 tttgtcctcgtgagcttagctcagttggtaaggacaatgcataaaatatgcaagatccggggttcgaacc 10303512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 20799461 - 20799393
Alignment:
Q  11 gtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccct 79  Q
    |||||||| ||| ||| ||||| || | |||||||||||||||| |||||  ||| |||||||||||||    
T  20799461 gtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtccggggttcaaaccct 20799393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 49473638 - 49473722
Alignment:
Q  10 tgtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    ||||||||| ||| |||  |||| || |||||||||||||||||| |||||  ||| |||||| ||||| || |||| |||||||    
T  49473638 tgtcctcgtgagcttagcccagttggtaaggacaatgcataatatatgcaaggtccggggttcgaaccccagtcaccacaaaaaa 49473722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 5907792 - 5907860
Alignment:
Q  10 tgtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 78  Q
    ||||| ||| ||| ||| ||||| ||||||||||||||||||||| |||||  ||||||||||||||||    
T  5907792 tgtccccgtgagcttagctcagttggcaaggacaatgcataatatatgcaaggtccagggttcaaaccc 5907860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 24740909 - 24740824
Alignment:
Q  9 ttgtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    |||||||||| ||||||| ||||| || | |||||||| || || | ||||| |||| |||||||||||| ||||||| |||||||    
T  24740909 ttgtcctcgtgagcgtagctcagttggtagggacaatgtatgatgtatgcaagatccggggttcaaaccccagccaccacaaaaaa 24740824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 25532967 - 25533034
Alignment:
Q  11 gtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 78  Q
    |||||||| ||| ||||||||| || | |||||||||||||||| |||||  ||| ||||||||||||    
T  25532967 gtcctcgtgagcttagttcagttggtatggacaatgcataatatatgcaaggtccggggttcaaaccc 25533034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 17283962 - 17284028
Alignment:
Q  28 tcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    ||||| || |||||||||||||||||| |||||  |||||||||| |||||| | |||| |||||||    
T  17283962 tcagttggtaaggacaatgcataatatatgcaaggtccagggttcgaaccctggacaccacaaaaaa 17284028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 45190323 - 45190253
Alignment:
Q  24 tagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    ||||||||| || | |||||||||||||||| |||||  | | || ||||||||||||||||| |||||||    
T  45190323 tagttcagttggtatggacaatgcataatatatgcaaggttcgggattcaaaccctagccaccacaaaaaa 45190253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 15803308 - 15803255
Alignment:
Q  7 atttgtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaa 60  Q
    |||| ||| ||| ||| ||||||||| ||||||||||||||||||||| |||||    
T  15803308 atttatccccgtgagcttagttcagttggcaaggacaatgcataatatatgcaa 15803255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 1794588 - 1794656
Alignment:
Q  9 ttgtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaacc 77  Q
    |||||||||| ||| ||| |||||  | | |||||||||||||||| ||||| |||| |||||||||||    
T  1794588 ttgtcctcgtgagcttagctcagttagtatggacaatgcataatatatgcaagatccggggttcaaacc 1794656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 9929271 - 9929215
Alignment:
Q  38 aggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    ||||||||||||||||| |||||  ||||||||| |||||| || |||| |||||||    
T  9929271 aggacaatgcataatatatgcaaggtccagggttaaaaccccagtcaccacaaaaaa 9929215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 27449484 - 27449444
Alignment:
Q  39 ggacaatgcataatatctgcaaaatccagggttcaaaccct 79  Q
    |||||||||||||||| ||||| || |||||||||||||||    
T  27449484 ggacaatgcataatatatgcaagattcagggttcaaaccct 27449444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 51882239 - 51882184
Alignment:
Q  39 ggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    |||||||||||||||| ||||| |||||||||||||||||  |||||| |||||||    
T  51882239 ggacaatgcataatatatgcaagatccagggttcaaaccccggccaccacaaaaaa 51882184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 1149137 - 1149053
Alignment:
Q  10 tgtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    ||||||||| ||| ||| ||||| || |||||||||||||||||| |||||  || ||||||| |||||| | |||| |||||||    
T  1149137 tgtcctcgtgagcttagctcagttggtaaggacaatgcataatatatgcaaggtctagggttcgaaccctggacaccacaaaaaa 1149053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 10102821 - 10102873
Alignment:
Q  39 ggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaa 91  Q
    |||||||||||||||  |||||||||||||||||||||||  |||||| ||||    
T  10102821 ggacaatgcataatacatgcaaaatccagggttcaaaccccggccaccacaaa 10102873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 10213744 - 10213796
Alignment:
Q  39 ggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaa 91  Q
    |||||||||||||||  |||||||||||||||||||||||  |||||| ||||    
T  10213744 ggacaatgcataatacatgcaaaatccagggttcaaaccccggccaccacaaa 10213796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 10926460 - 10926512
Alignment:
Q  8 tttgtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaa 60  Q
    ||||||||||||||| ||| ||||| || |||||||||||||||||| |||||    
T  10926460 tttgtcctcgtaagcttagctcagttggtaaggacaatgcataatatatgcaa 10926512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 41817521 - 41817568
Alignment:
Q  39 ggacaatgcataatatctgcaaaatccagggttcaaaccctagccacc 86  Q
    |||||||||||||||| |||||  ||| ||||||||||||||||||||    
T  41817521 ggacaatgcataatatatgcaaggtccggggttcaaaccctagccacc 41817568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 45431970 - 45432025
Alignment:
Q  39 ggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    |||||||||||||||| |||||  ||| ||||||||||||| |||||| |||||||    
T  45431970 ggacaatgcataatatatgcaaggtccggggttcaaaccctggccaccacaaaaaa 45432025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 759648 - 759595
Alignment:
Q  24 tagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaacc 77  Q
    ||||||||| || | |||||||||||||||| |||||| | |||||||||||||    
T  759648 tagttcagttggtagggacaatgcataatatatgcaaagttcagggttcaaacc 759595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 23525171 - 23525131
Alignment:
Q  28 tcagtcggcaaggacaatgcataatatctgcaaaatccagg 68  Q
    ||||| ||||||||||||||||||||| |||||||| ||||    
T  23525171 tcagttggcaaggacaatgcataatatatgcaaaattcagg 23525131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 37932321 - 37932407
Alignment:
Q  8 tttgtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    ||||||||||| ||| ||| ||||| || | |||||||||||||||| |||||  ||| |||||| |||||| |||||| |||||||    
T  37932321 tttgtcctcgtgagcttagctcagttggtatggacaatgcataatatatgcaaggtccggggttcgaaccctggccaccacaaaaaa 37932407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 27086076 - 27086155
Alignment:
Q  15 tcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    |||| ||| |||||||||  | ||| |||||| ||||||| |||||  |||||||||||||||| ||||||| |||||||    
T  27086076 tcgtgagcttagttcagtttgtaagaacaatgtataatatatgcaaggtccagggttcaaaccccagccaccacaaaaaa 27086155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 16752556 - 16752486
Alignment:
Q  24 tagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    ||||||||| || |||||||||||||||||| ||||| || | |||||| || || ||||||| |||||||    
T  16752556 tagttcagttggtaaggacaatgcataatatatgcaagattcggggttcgaatcccagccaccacaaaaaa 16752486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 16089444 - 16089493
Alignment:
Q  11 gtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaa 60  Q
    |||||||||||| ||||||||| || | |||||||||||||||| |||||    
T  16089444 gtcctcgtaagcttagttcagttggtatggacaatgcataatatttgcaa 16089493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 6624769 - 6624837
Alignment:
Q  10 tgtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 78  Q
    ||||||||| ||| ||| ||||| |||| |||||||||||||||| |||||  ||| |||||| |||||    
T  6624769 tgtcctcgtgagcttagctcagttggcatggacaatgcataatatatgcaaggtccggggttcgaaccc 6624837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 27219281 - 27219365
Alignment:
Q  10 tgtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    ||||||||| ||| ||| |||||  |||  |||||| |||||||| || || |||||||||||||||||  |||||||| |||||    
T  27219281 tgtcctcgtgagcttagctcagttagcagagacaatacataatatatgtaagatccagggttcaaaccccggccaccgccaaaaa 27219365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 31280039 - 31280079
Alignment:
Q  37 aaggacaatgcataatatctgcaaaatccagggttcaaacc 77  Q
    |||||||||||||||||| ||||| |||| |||||||||||    
T  31280039 aaggacaatgcataatatatgcaatatccggggttcaaacc 31280079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 13286124 - 13286207
Alignment:
Q  10 tgtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    ||||||||| ||| ||| ||||| || |  ||||||||||||||| ||||| |||| ||||||||||||  ||||||||||||||    
T  13286124 tgtcctcgtgagcttagctcagttggtatagacaatgcataatatatgcaagatcc-gggttcaaaccccggccaccgcaaaaaa 13286207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 15020754 - 15020830
Alignment:
Q  10 tgtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccacc 86  Q
    ||||||||| ||| || |||||| || | |||||||| ||||||| ||||| |||| ||||||||||||| ||||||    
T  15020754 tgtcctcgttagcttaattcagttggtatggacaatgtataatatatgcaagatccggggttcaaaccctggccacc 15020830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 18533663 - 18533745
Alignment:
Q  11 gtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaa 93  Q
    |||||||||||| |   ||||| || ||| |||||||||||||| ||||| |||| |||||||||||| | ||||| ||||||    
T  18533663 gtcctcgtaagcttgactcagttggtaagaacaatgcataatatatgcaagatccggggttcaaaccccaaccaccacaaaaa 18533745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 8881297 - 8881350
Alignment:
Q  39 ggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaa 92  Q
    |||||||||||||||| |||||  ||||||||||||||||  |||||| |||||    
T  8881297 ggacaatgcataatatatgcaaggtccagggttcaaaccccggccaccacaaaa 8881350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 8999926 - 8999873
Alignment:
Q  43 aatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaata 96  Q
    |||||||||||| |||||| ||||||||||||||||   ||||| |||||||||    
T  8999926 aatgcataatatatgcaaagtccagggttcaaaccccgaccaccacaaaaaata 8999873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 23852902 - 23852954
Alignment:
Q  8 tttgtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaa 60  Q
    ||||||||||| ||| ||| |||||||| | |||||||||||||||| |||||    
T  23852902 tttgtcctcgtgagcttagctcagtcggtatggacaatgcataatatatgcaa 23852954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 36781401 - 36781485
Alignment:
Q  10 tgtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    |||| |||| ||| ||| ||||| || ||||||||| |||||||| |||||| ||| ||||| ||||||   |||||||||||||    
T  36781401 tgtcatcgtgagcctagctcagttggtaaggacaatacataatatatgcaaagtccggggtttaaaccccgaccaccgcaaaaaa 36781485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 31971520 - 31971591
Alignment:
Q  8 tttgtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccct 79  Q
    ||||||||||||||| ||  ||||| || |||||||||||||||||| |||||  |||  ||||||||||||    
T  31971520 tttgtcctcgtaagcttaactcagttggtaaggacaatgcataatatatgcaaggtccgaggttcaaaccct 31971591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 78
Target Start/End: Complemental strand, 32524459 - 32524420
Alignment:
Q  39 ggacaatgcataatatctgcaaaatccagggttcaaaccc 78  Q
    |||||||||||||||| |||||| ||||||||||||||||    
T  32524459 ggacaatgcataatatatgcaaagtccagggttcaaaccc 32524420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 18253376 - 18253323
Alignment:
Q  41 acaatgcataatatctgcaaaatccagggttcaaaccctagccaccgcaaaaaa 94  Q
    |||||||||||||| |||||  |||||||||||||||| | ||||| |||||||    
T  18253376 acaatgcataatatatgcaaggtccagggttcaaaccccatccaccacaaaaaa 18253323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 185255 - 185324
Alignment:
Q  9 ttgtcctcgtaagcgtagttcagtcggcaaggacaatgcataatatctgcaaaatccagggttcaaaccc 78  Q
    |||||||||| ||| ||| ||||| || | ||||||||||||| || ||||| |||| ||||||||||||    
T  185255 ttgtcctcgtgagcttagctcagttggtatggacaatgcataaaatatgcaagatccggggttcaaaccc 185324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University