View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1193_high_7 (Length: 391)
Name: NF1193_high_7
Description: NF1193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1193_high_7 |
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| [»] chr5 (4 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 391
Target Start/End: Complemental strand, 1581550 - 1581177
Alignment:
| Q |
14 |
agataataatgtaaacagtataaaacattttgcatgcaactacttaaaactagaagaaacaactcaaacactacgtggcttgtaaaataaaatactttta |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1581550 |
agataataatgtaaacagtataaaacattttgcatgcaactacttaaaactagaagaaacaactcaaacactacgtggcttgtaaaa---aatactttta |
1581454 |
T |
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| Q |
114 |
caagttgttcataatcaaattgaataccaatataaactcttgagggctatgtaatgtaattcttcctagctaggtaagactaattcttcaagaggctgat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1581453 |
caagttgttcataatcaaattgaataccaatataaactcttgaggactatgtaatgtaattcttcctagctaggtaagactaattcttccagaggctgat |
1581354 |
T |
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| Q |
214 |
actggtccatctccttataaactatttcaaagtcttcttcatcaagcttccagaatcgcataaacaaagtagagttaaatgcagaaacaaataaacaagt |
313 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1581353 |
actggtccatctccttataaactatttcaa-gtcttcttcatcaagcttccagaatcgcataaacaaagtacagttaaatgcagaaacaaataaacaagt |
1581255 |
T |
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| Q |
314 |
ttatagctattacctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagttttt |
391 |
Q |
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| T |
1581254 |
ttatagctattacctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagttttt |
1581177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 391
Target Start/End: Original strand, 1603265 - 1603638
Alignment:
| Q |
14 |
agataataatgtaaacagtataaaacattttgcatgcaactacttaaaactagaagaaacaactcaaacactacgtggcttgtaaaataaaatactttta |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1603265 |
agataataatgtaaacagtataaaacattttgcatgcaactacttaaaactagaagaaacaactcaaacactacgtggcttgtaaaa---aatactttta |
1603361 |
T |
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| Q |
114 |
caagttgttcataatcaaattgaataccaatataaactcttgagggctatgtaatgtaattcttcctagctaggtaagactaattcttcaagaggctgat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1603362 |
caagttgttcataatcaaattgaataccaatataaactcttgaggactatgtaatgtaattcttcctagctaggtaagactaattcttccagaggctgat |
1603461 |
T |
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| Q |
214 |
actggtccatctccttataaactatttcaaagtcttcttcatcaagcttccagaatcgcataaacaaagtagagttaaatgcagaaacaaataaacaagt |
313 |
Q |
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| T |
1603462 |
actggtccatctccttataaactatttcaa-gtcttcttcatcaagcttccagaatcgcataaacaaagtacagttaaatgcagaaacaaataaacaagt |
1603560 |
T |
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| Q |
314 |
ttatagctattacctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagttttt |
391 |
Q |
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| T |
1603561 |
ttatagctattacctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagttttt |
1603638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 286 - 391
Target Start/End: Complemental strand, 1587763 - 1587659
Alignment:
| Q |
286 |
agttaaatgcagaaacaaataaacaagtttatagctattacctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttga |
385 |
Q |
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||||||||||||||| ||||||| |||||||| | || |||| || ||||| |||| ||||||||||||| |||||||||||| ||||| ||||||| |
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| T |
1587763 |
agttaaatgcagaaaataataaacgagtttataac-atcacctggttattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttga |
1587665 |
T |
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| Q |
386 |
gttttt |
391 |
Q |
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|||||| |
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| T |
1587664 |
gttttt |
1587659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 1613865 - 1613920
Alignment:
| Q |
34 |
taaaacattttgcatgcaactacttaaaactagaagaaacaactcaaacactacgtg |
90 |
Q |
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| T |
1613865 |
taaaacattttttatgcagcaacttaaaactagaagaatcaactcaaa-actacgtg |
1613920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 263 - 387
Target Start/End: Original strand, 39615670 - 39615795
Alignment:
| Q |
263 |
ccagaatcgcataaacaaagtag-agttaaatgcagaaacaaataaacaagtttatagctattacctaatttttgtcgagtagaaagtgcaacttgctat |
361 |
Q |
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|||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||| ||||||||| | |
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| T |
39615670 |
ccagaaacgcataaacaaagtactagttaaatgcagaaagaaataaacaagtttatagctattacctaattaatgttgagtacaaactgcaacttgtcct |
39615769 |
T |
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| Q |
362 |
tgaccctaaatgtccaaatgttgagt |
387 |
Q |
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|||||||||||| ||||| ||||||| |
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| T |
39615770 |
tgaccctaaatgaccaaacgttgagt |
39615795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 289 - 391
Target Start/End: Original strand, 19270025 - 19270126
Alignment:
| Q |
289 |
taaatgcagaaacaaataaacaagtttatagctattacctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagtt |
388 |
Q |
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|||||||||||| ||||||| ||||||| | || |||| ||| |||||||||| ||||||||||||| |||||||||||| ||||| ||||| |||| |
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| T |
19270025 |
taaatgcagaaaataataaacgcgtttataac-atcacctgattattgtcgagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttaagtt |
19270123 |
T |
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| Q |
389 |
ttt |
391 |
Q |
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||| |
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| T |
19270124 |
ttt |
19270126 |
T |
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