View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1193_low_1 (Length: 580)
Name: NF1193_low_1
Description: NF1193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1193_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 33 - 508
Target Start/End: Original strand, 1324596 - 1325082
Alignment:
| Q |
33 |
aaaacaacatgtactaaagctatatataatatacgtgcatacatatcaaattcttctcatatcacgtaccataaacccgcagccgtaccacataccaact |
132 |
Q |
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| T |
1324596 |
aaaacaacacgtactgaagctatatataatatacgtgcatacatatcaaattcttctcatatcgcgtaccataaacccgcagccgtaccacataccaact |
1324695 |
T |
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| Q |
133 |
aagatcatattcacatgattcgcaatttacattggtatgtggtaggg-------tttacggtttttgaaatttacccttcaccttttcttactttgtacc |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1324696 |
aagatcatattcacatgattcgcaatttacattggtatgtggtaggggtgcaggtttacggtttttgaaatttacccttcaccttttcttactttgtacc |
1324795 |
T |
|
| Q |
226 |
attatttaatttgtgcctctgacagacatatctattatatatatat----gtgtgtgtgctgagtgatagcagatgtaccatattgtattgttgtacttg |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1324796 |
attatttaatttgtgcctctgacagacatatctattatatatatatatatgtgtgtgtgttgagtgatagcagatgtaccatattgtattgttgtacttg |
1324895 |
T |
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| Q |
322 |
taattagtgatggctcggtttgnnnnnnngtctctcttattcttattcttattcttaattgatggttctaagagtgagcttcatgttggtttctactcca |
421 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1324896 |
taattagtgatggctcggtttgtttttttgtctctcttattcttattcttattcttaattgatggttctaagagtcagcttcatgttggtttctactcca |
1324995 |
T |
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| Q |
422 |
acacatgtcctcaagtagagtccactgtccatgatgttgttagagaagctgttctttttgacagaaccaaggctgctgttcatctca |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1324996 |
acacatgtcctcaagtagagtccactgtccatgatgttgttagagaagctgttctttttgacagaaccaaggctgctgttcttctca |
1325082 |
T |
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