View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1193_low_11 (Length: 381)
Name: NF1193_low_11
Description: NF1193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1193_low_11 |
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| [»] scaffold0557 (1 HSPs) |
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| [»] scaffold0726 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 71 - 368
Target Start/End: Complemental strand, 29465506 - 29465209
Alignment:
| Q |
71 |
caaatgatataatttggcttcaccaaaccagcccccaaaaaatattggttggttcctggcttctaaagaacttgatttcactcttttagccatggaactg |
170 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
29465506 |
caaatgatataatttggcttcaccaaaccagcccccaaaaaatattggttgattcctggcatccaaagaacttgatttcactcttttagccatggaactg |
29465407 |
T |
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| Q |
171 |
aaaatacaacataaactnnnnnnntacgaccgaaataggaaataatcaatcaagagcagaccattatagaaaaatgtagcaccaatgctccccatttcct |
270 |
Q |
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||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
29465406 |
aaaatacaacagaaactaaaaaaatacgaccgaaataggaaataattaatcaagagcagaccattatacaaaaatgtggcaccaatgctccccatttcct |
29465307 |
T |
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| Q |
271 |
nnnnnnnnnnnnnttgaatcaatagaaaaagtaatactatttctctatctccatgttcaagccatccctctggaatctatattccctctcatatcttc |
368 |
Q |
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||||||||||||||||||||||| || |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29465306 |
aaaaaaataaaaattgaatcaatagaaaaagtaatattaattctctatctccttgttcaagccatccctctagaatctatattccctctcatatcttc |
29465209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 71 - 368
Target Start/End: Original strand, 9723 - 10019
Alignment:
| Q |
71 |
caaatgatataatttggcttcaccaaaccagcccccaaaaaatattggttggttcctggcttctaaagaacttgatttcactcttttagccatggaactg |
170 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
9723 |
caaatgatataatttggcttcaccaaaccagcccccaaaaaatattggttgattcctggcatccaaagaacttgatttcactcttttagccatggaactg |
9822 |
T |
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| Q |
171 |
aaaatacaacataaactnnnnnnntacgaccgaaataggaaataatcaatcaagagcagaccattatagaaaaatgtagcaccaatgctccccatttcct |
270 |
Q |
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||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
9823 |
aaaatacaacagaaact-aaaaaatacgaccgaaacagaaaataatcaatcaagagcagaccattatacaaaaatgtggcaccaatgctccccatttcct |
9921 |
T |
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| Q |
271 |
nnnnnnnnnnnnnttgaatcaatagaaaaagtaatactatttctctatctccatgttcaagccatccctctggaatctatattccctctcatatcttc |
368 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9922 |
aaaaaaataaaaattgaatcaatagaaaaagtaacactaattctctatctccatgttcaagccatccctctagaatctatattccctctcatatcttc |
10019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0726 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: scaffold0726
Description:
Target: scaffold0726; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 71 - 368
Target Start/End: Complemental strand, 2639 - 2342
Alignment:
| Q |
71 |
caaatgatataatttggcttcaccaaaccagcccccaaaaaatattggttggttcctggcttctaaagaacttgatttcactcttttagccatggaactg |
170 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
2639 |
caaatgatataatttggcttcaccaaaccagcccccaaaaaatattggctgattcctggcatccaaagaacttgatttcactcttttagccatggaactg |
2540 |
T |
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| Q |
171 |
aaaatacaacataaactnnnnnnntacgaccgaaataggaaataatcaatcaagagcagaccattatagaaaaatgtagcaccaatgctccccatttcct |
270 |
Q |
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|||| |||||| ||||| ||||||||| | | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
2539 |
aaaaaacaacagaaactaaaaaaatacgaccgagacaagaaataatcaatcaagagcagaccattatacaaaaatgtagcaccaatgctccccattttct |
2440 |
T |
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| Q |
271 |
nnnnnnnnnnnnnttgaatcaatagaaaaagtaatactatttctctatctccatgttcaagccatccctctggaatctatattccctctcatatcttc |
368 |
Q |
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| T |
2439 |
aaaaaaataaaaattgaatcaatagaaaaagtaatactaattctctatctccatgttcaagccatccctctagagtctatattccctctcatatcttc |
2342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 366
Target Start/End: Complemental strand, 9781948 - 9781893
Alignment:
| Q |
311 |
ttctctatctccatgttcaagccatccctctggaatctatattccctctcatatct |
366 |
Q |
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||||| ||||| ||||||||||||| |||| ||||||||| |||||||||||||| |
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| T |
9781948 |
ttctcaatctctatgttcaagccattcctcacgaatctataatccctctcatatct |
9781893 |
T |
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