View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1193_low_15 (Length: 333)
Name: NF1193_low_15
Description: NF1193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1193_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 6 - 304
Target Start/End: Original strand, 7224392 - 7224690
Alignment:
| Q |
6 |
ctccaagaatattaagccatggaacaacatacttcagtgtcaaaattctctcacaagttaaatacaaaacaattataaaatcatttcataggcgaaggag |
105 |
Q |
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| T |
7224392 |
ctccaaaaaaattaagccatggaacaacatacttcagtgtcaaaattctctcacaagttaaatacaaaacaattataaaatcatttcagaggcgaaggag |
7224491 |
T |
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| Q |
106 |
actaaaatacacgattcatcaaaccataaggataaaactagatgaaaaacatggtgatgaagtgatgaaacatactcctttttgaaaatctcaacaagaa |
205 |
Q |
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| T |
7224492 |
actaaaatacacgattcatcaaaccataaggataaaactagatgaaaaacatggtgatgaagtgatgaaacggactcctttttgaaaatctcaacaagaa |
7224591 |
T |
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| Q |
206 |
cttatataatggtctaaaccctccatccccagcacttgtttctggaaataaaaaatccaagcttgcttcctaggtcaatgattagtgagcctaaattaa |
304 |
Q |
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| T |
7224592 |
cttatataatggtctaaaccctccatccccagcacttgtttatggcaataaaaaacccaagcttgcttcctaggtcaatgattagtgagcctaaattaa |
7224690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 33 - 304
Target Start/End: Original strand, 2918900 - 2919172
Alignment:
| Q |
33 |
catacttcagtgtcaaaattctctcacaagttaaatacaaaacaattataaaatcatttcataggcgaaggagactaaaatacacgattcatcaaaccat |
132 |
Q |
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| T |
2918900 |
catacttcagtgtcgaaattctctcacgagtcaaatacaaaa--attataaaatcctttcataggggaaggagactaaaatacatggttcatcaaaacat |
2918997 |
T |
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| Q |
133 |
aaggat---aaaactagatgaaaaacatggtgatgaagtgatgaaacatactcctttttgaaaatctcaacaagaacttatataatggtctaaaccctcc |
229 |
Q |
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| T |
2918998 |
aagaaggtcaaaactagatgaaaaacatggtgatggagtg-tgaaacagactcctttatgaaaatctcaacaacaacttatagaatggtctaaacccccc |
2919096 |
T |
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| Q |
230 |
atccccagcacttgtttctggaaat-aaaaaatccaagcttgcttcctaggtcaatgattagtgagcctaaattaa |
304 |
Q |
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||||||||||||||||| ||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2919097 |
atccccagcacttgtttttggcaataaaaaaacccaagcttgcttcctaggtcaatgattagtgagcctaaattaa |
2919172 |
T |
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