View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1193_low_16 (Length: 320)
Name: NF1193_low_16
Description: NF1193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1193_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 30550779 - 30550466
Alignment:
| Q |
1 |
cacatcgaataattaattatatgacatgaacaataaatataattcagaataaattttttcttaataagttgatgacaattaacgttagttgtaaatttgt |
100 |
Q |
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| T |
30550779 |
cacatcgaataattaattatatgacatgaacaataaatataattcagaataaattttttattaataagttgatgacaattaaagttagttgtaaatttgt |
30550680 |
T |
|
| Q |
101 |
taggaaatttctagttaataaatatcctaactaaatttatttggtcgtcaattttttgggctttaatccaaattatgaacctgtataaaagttatgcctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30550679 |
taggaaatttctagttaataaatatcctaactaaatttatttggtcgtcaattttttccgctttaatccaaattatgaacctgtataaaagttatgcctt |
30550580 |
T |
|
| Q |
201 |
acaatttctgggttgatgtttaaatttgtgactaaatgtagttaaaaatgagtacatattgtaatgtaaaaccactcttaaatttctcttctaagcatgc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30550579 |
acaatttctgggttgatgtttaaatttgtgactaaatgtagttaaaaataagtacatattgtaatgtaaaaccactcttgaatttctcttctaagcatgc |
30550480 |
T |
|
| Q |
301 |
atagatgaagatac |
314 |
Q |
| |
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|||||||||||||| |
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| T |
30550479 |
atagatgaagatac |
30550466 |
T |
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