View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1193_low_17 (Length: 320)

Name: NF1193_low_17
Description: NF1193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1193_low_17
NF1193_low_17
[»] chr7 (28 HSPs)
chr7 (77-320)||(17504041-17504284)
chr7 (77-320)||(17548930-17549173)
chr7 (185-320)||(17056052-17056187)
chr7 (161-320)||(27218604-27218763)
chr7 (188-309)||(19544895-19545016)
chr7 (185-312)||(22819207-22819334)
chr7 (184-273)||(45165088-45165177)
chr7 (161-264)||(4937666-4937769)
chr7 (184-320)||(6335886-6336022)
chr7 (201-273)||(25018847-25018919)
chr7 (188-275)||(34104003-34104090)
chr7 (201-264)||(39931134-39931197)
chr7 (161-264)||(234976-235079)
chr7 (161-264)||(17721134-17721237)
chr7 (161-320)||(31423101-31423260)
chr7 (225-297)||(8752901-8752973)
chr7 (161-264)||(47877482-47877584)
chr7 (193-235)||(33795924-33795966)
chr7 (161-273)||(20349463-20349574)
chr7 (225-297)||(23054476-23054548)
chr7 (161-264)||(11276786-11276889)
chr7 (192-275)||(11341326-11341409)
chr7 (232-275)||(41805285-41805328)
chr7 (193-235)||(18767939-18767981)
chr7 (193-235)||(34457725-34457767)
chr7 (191-296)||(15124338-15124443)
chr7 (184-249)||(20918482-20918547)
chr7 (201-309)||(45993115-45993222)
[»] chr6 (34 HSPs)
chr6 (77-320)||(7956153-7956396)
chr6 (84-318)||(18588771-18589005)
chr6 (166-320)||(32186187-32186341)
chr6 (161-317)||(19350443-19350599)
chr6 (201-261)||(10362672-10362732)
chr6 (166-320)||(14843619-14843773)
chr6 (185-278)||(29056042-29056135)
chr6 (185-265)||(12673655-12673735)
chr6 (215-317)||(29976493-29976595)
chr6 (161-273)||(26514223-26514335)
chr6 (225-320)||(34434823-34434918)
chr6 (184-294)||(15602846-15602956)
chr6 (161-264)||(2554105-2554208)
chr6 (167-234)||(13086044-13086111)
chr6 (185-312)||(17078680-17078807)
chr6 (161-320)||(17605816-17605975)
chr6 (195-273)||(25350755-25350833)
chr6 (201-309)||(503025-503133)
chr6 (161-320)||(10576732-10576891)
chr6 (185-320)||(11060344-11060479)
chr6 (225-311)||(10919955-10920041)
chr6 (187-253)||(10922078-10922144)
chr6 (185-235)||(23065613-23065663)
chr6 (179-320)||(1104429-1104570)
chr6 (187-320)||(17577200-17577333)
chr6 (201-309)||(19256179-19256287)
chr6 (161-264)||(13938218-13938321)
chr6 (201-264)||(18682112-18682175)
chr6 (201-235)||(8264762-8264796)
chr6 (185-235)||(18051016-18051066)
chr6 (187-264)||(14372529-14372606)
chr6 (166-227)||(21629682-21629743)
chr6 (201-309)||(33640457-33640564)
chr6 (237-297)||(34180499-34180559)
[»] chr4 (31 HSPs)
chr4 (159-320)||(7098979-7099140)
chr4 (185-293)||(9777893-9778001)
chr4 (166-297)||(29553245-29553376)
chr4 (184-273)||(40688588-40688677)
chr4 (184-273)||(19162706-19162795)
chr4 (161-320)||(9690921-9691080)
chr4 (161-264)||(23642129-23642232)
chr4 (161-264)||(23647787-23647890)
chr4 (161-264)||(47419303-47419406)
chr4 (161-315)||(2072039-2072193)
chr4 (185-246)||(48805501-48805562)
chr4 (201-297)||(2365545-2365641)
chr4 (187-309)||(55725199-55725321)
chr4 (214-275)||(38296258-38296319)
chr4 (201-309)||(8935613-8935721)
chr4 (202-258)||(36183077-36183133)
chr4 (161-264)||(5789630-5789733)
chr4 (161-264)||(19755766-19755869)
chr4 (161-264)||(19783937-19784040)
chr4 (187-264)||(48312619-48312696)
chr4 (192-320)||(54685140-54685268)
chr4 (165-297)||(23657800-23657932)
chr4 (161-309)||(54482652-54482800)
chr4 (161-264)||(1828078-1828181)
chr4 (202-249)||(41382513-41382560)
chr4 (165-235)||(49925834-49925904)
chr4 (207-261)||(52617406-52617460)
chr4 (202-256)||(56337046-56337100)
chr4 (185-234)||(4524194-4524243)
chr4 (193-261)||(29328318-29328387)
chr4 (193-237)||(26694459-26694503)
[»] chr1 (21 HSPs)
chr1 (185-320)||(22191264-22191399)
chr1 (166-320)||(3544583-3544737)
chr1 (164-315)||(19014471-19014621)
chr1 (185-288)||(3074268-3074371)
chr1 (207-317)||(28358435-28358545)
chr1 (185-294)||(21405360-21405469)
chr1 (204-261)||(45270783-45270840)
chr1 (161-264)||(6051102-6051205)
chr1 (164-320)||(1248068-1248223)
chr1 (165-309)||(25504487-25504631)
chr1 (202-309)||(38070372-38070479)
chr1 (161-227)||(35541548-35541614)
chr1 (161-249)||(5809080-5809168)
chr1 (167-235)||(39430782-39430850)
chr1 (268-320)||(43943960-43944012)
chr1 (193-320)||(13867315-13867442)
chr1 (210-273)||(40563087-40563150)
chr1 (167-234)||(49264532-49264599)
chr1 (166-264)||(47622615-47622713)
chr1 (187-273)||(52691996-52692082)
chr1 (167-232)||(20796173-20796238)
[»] chr3 (33 HSPs)
chr3 (201-273)||(52250653-52250725)
chr3 (173-320)||(31675442-31675589)
chr3 (208-320)||(31920833-31920945)
chr3 (185-320)||(44888427-44888562)
chr3 (185-314)||(19875766-19875895)
chr3 (193-261)||(48930257-48930325)
chr3 (167-309)||(55367115-55367257)
chr3 (201-309)||(6825361-6825469)
chr3 (161-264)||(2364776-2364879)
chr3 (162-309)||(25024337-25024484)
chr3 (183-237)||(8130472-8130526)
chr3 (187-315)||(18381584-18381711)
chr3 (185-264)||(31547894-31547974)
chr3 (161-264)||(10323109-10323212)
chr3 (161-320)||(12341737-12341896)
chr3 (161-264)||(19919767-19919870)
chr3 (237-312)||(9510327-9510402)
chr3 (237-312)||(9518302-9518377)
chr3 (161-264)||(53941802-53941905)
chr3 (179-297)||(5342717-5342835)
chr3 (166-309)||(19891181-19891324)
chr3 (173-296)||(22734229-22734352)
chr3 (161-264)||(34332353-34332456)
chr3 (202-261)||(46190032-46190091)
chr3 (161-309)||(48569532-48569680)
chr3 (207-266)||(14307753-14307812)
chr3 (161-228)||(16179446-16179513)
chr3 (185-235)||(21740090-21740140)
chr3 (193-235)||(36709441-36709483)
chr3 (193-235)||(45684707-45684749)
chr3 (207-320)||(40513206-40513319)
chr3 (185-249)||(14864018-14864082)
chr3 (193-237)||(42675004-42675047)
[»] chr5 (34 HSPs)
chr5 (164-286)||(42039221-42039343)
chr5 (173-320)||(476724-476871)
chr5 (164-320)||(42259782-42259938)
chr5 (161-264)||(35983329-35983432)
chr5 (161-264)||(42514219-42514322)
chr5 (184-249)||(27325286-27325351)
chr5 (142-238)||(36256255-36256354)
chr5 (201-273)||(41590635-41590707)
chr5 (161-320)||(8299664-8299823)
chr5 (188-309)||(380427-380548)
chr5 (201-273)||(4297838-4297910)
chr5 (161-227)||(25856999-25857065)
chr5 (161-258)||(30731858-30731955)
chr5 (161-249)||(12825698-12825786)
chr5 (185-249)||(26262984-26263048)
chr5 (193-312)||(22094740-22094859)
chr5 (161-264)||(27116711-27116814)
chr5 (161-264)||(28535213-28535316)
chr5 (161-264)||(31642010-31642113)
chr5 (165-312)||(20208210-20208356)
chr5 (166-309)||(27795988-27796131)
chr5 (188-252)||(22176376-22176440)
chr5 (192-264)||(42928661-42928733)
chr5 (161-264)||(23238882-23238985)
chr5 (198-320)||(10780737-10780859)
chr5 (222-320)||(18896109-18896207)
chr5 (161-227)||(27165525-27165591)
chr5 (209-297)||(29572377-29572465)
chr5 (209-297)||(29573754-29573842)
chr5 (209-297)||(29575131-29575219)
chr5 (209-297)||(29576508-29576596)
chr5 (209-297)||(29577885-29577973)
chr5 (209-297)||(29579262-29579350)
chr5 (200-312)||(35637673-35637785)
[»] scaffold0024 (1 HSPs)
scaffold0024 (161-278)||(86725-86842)
[»] chr8 (27 HSPs)
chr8 (161-265)||(42649718-42649822)
chr8 (201-309)||(36492920-36493028)
chr8 (161-320)||(20824798-20824957)
chr8 (184-238)||(4310406-4310460)
chr8 (207-309)||(36025066-36025168)
chr8 (166-309)||(29721403-29721546)
chr8 (166-264)||(7924890-7924988)
chr8 (202-312)||(37165611-37165721)
chr8 (225-309)||(12332411-12332495)
chr8 (184-320)||(18187668-18187804)
chr8 (161-273)||(25193587-25193699)
chr8 (161-264)||(172577-172680)
chr8 (161-264)||(8300302-8300405)
chr8 (161-309)||(13878980-13879128)
chr8 (161-264)||(9923100-9923203)
chr8 (185-320)||(17659354-17659489)
chr8 (202-312)||(12341107-12341217)
chr8 (187-249)||(38046883-38046945)
chr8 (166-264)||(41664906-41665004)
chr8 (185-233)||(12134850-12134898)
chr8 (185-249)||(28992782-28992846)
chr8 (173-296)||(5585200-5585323)
chr8 (165-235)||(36157657-36157727)
chr8 (233-309)||(8902398-8902474)
chr8 (161-264)||(25090886-25090989)
chr8 (173-226)||(15439635-15439688)
chr8 (173-226)||(15530939-15530992)
[»] chr2 (17 HSPs)
chr2 (201-273)||(43310798-43310870)
chr2 (204-273)||(26146757-26146826)
chr2 (142-273)||(13416148-13416282)
chr2 (193-309)||(37445624-37445740)
chr2 (187-309)||(14440269-14440391)
chr2 (77-315)||(44028707-44028940)
chr2 (171-234)||(2207390-2207453)
chr2 (187-237)||(6727343-6727393)
chr2 (167-261)||(6823916-6824010)
chr2 (165-234)||(22725007-22725076)
chr2 (201-273)||(10689094-10689165)
chr2 (167-234)||(9668574-9668641)
chr2 (166-249)||(28253224-28253307)
chr2 (206-249)||(32191609-32191652)
chr2 (193-235)||(28400117-28400159)
chr2 (187-309)||(33515700-33515822)
chr2 (185-245)||(28598467-28598526)
[»] scaffold0034 (1 HSPs)
scaffold0034 (161-264)||(105381-105484)
[»] scaffold0061 (1 HSPs)
scaffold0061 (207-273)||(55207-55273)
[»] scaffold0043 (1 HSPs)
scaffold0043 (166-308)||(34103-34245)
[»] scaffold0017 (1 HSPs)
scaffold0017 (207-273)||(143361-143427)
[»] scaffold0189 (1 HSPs)
scaffold0189 (207-258)||(6633-6684)
[»] scaffold0048 (1 HSPs)
scaffold0048 (225-275)||(63826-63876)
[»] scaffold0026 (1 HSPs)
scaffold0026 (201-249)||(67619-67667)
[»] scaffold0016 (1 HSPs)
scaffold0016 (225-273)||(28337-28385)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 77 - 320
Target Start/End: Complemental strand, 17504284 - 17504041
Alignment:
Q  77 caccacagatcatgccaaaaaagagtagactccccatcccccacacgacgcaccacaccctcattaaaccaaccaacaccgccccctaccccatctctaa 176  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||    
T  17504284 caccaccgatcatgccaaaaaagagtagactccccatcccccacacgacgtgccacacactcattaaaccaaccaacaccgccccctaccccatctctaa 17504185  T
Q  177 tcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaat 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  17504184 tcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccgtatctcgccaccaacactcgataccaaag 17504085  T
Q  277 accacctctatcaactaacatacgccaacaccacttacccaaca 320  Q
    |||| ||||||||||||||||| |||||||||||||||| ||||    
T  17504084 accatctctatcaactaacatatgccaacaccacttacctaaca 17504041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 77 - 320
Target Start/End: Original strand, 17548930 - 17549173
Alignment:
Q  77 caccacagatcatgccaaaaaagagtagactccccatcccccacacgacgcaccacaccctcattaaaccaaccaacaccgccccctaccccatctctaa 176  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||    
T  17548930 caccaccgatcatgccaaaaaagagtagactccccatcccccacacgacgtgccacacactcattaaaccaaccaacaccgccccctaccccatctctaa 17549029  T
Q  177 tcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaat 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  17549030 tcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccgtatctcgccaccaacactcgataccaaag 17549129  T
Q  277 accacctctatcaactaacatacgccaacaccacttacccaaca 320  Q
    |||| ||||||||||||||||| |||||||||||||||| ||||    
T  17549130 accatctctatcaactaacatatgccaacaccacttacctaaca 17549173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 185 - 320
Target Start/End: Original strand, 17056052 - 17056187
Alignment:
Q  185 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctc 284  Q
    ||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||| | |||||||||||| | |||||| |||| |||      
T  17056052 acctccttccaccacgaagaaacactccggcccccaaccaccaacctcccatcctcctcaccataacgcgccaccaacaccctataccacatactaccct 17056151  T
Q  285 tatcaactaacatacgccaacaccacttacccaaca 320  Q
    |||||||||| |  | ||||||||| ||||| ||||    
T  17056152 tatcaactaataacctccaacaccatttacctaaca 17056187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 320
Target Start/End: Complemental strand, 27218763 - 27218604
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    ||||| ||||| |||||||||   ||||||||||||||  | ||  |||||||||||||| || ||||||||||  ||||||||||||||||||||||||    
T  27218763 cctactccatccctaatcttcgctacctccttccaccaagatgatacactccggcccccaaccgccaacctccctgcctcctcaccatatctcgccacca 27218664  T
Q  261 acactcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 320  Q
    |||| | ||||||||  ||||||||||| |  ||||  ||||||||||| ||||| ||||    
T  27218663 acaccctataccaaaatccacctctatctatcaacaaccgccaacaccatttacctaaca 27218604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 188 - 309
Target Start/End: Complemental strand, 19545016 - 19544895
Alignment:
Q  188 tccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctat 287  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |  |||||||||||||||  | | ||||||| | ||||||||  ||| ||||||    
T  19545016 tccttccaccacaaagaaccactccggcccccaacctccaacctctctgcctcctcaccatatcgtgtcgccaacaccctataccaaaacccatctctat 19544917  T
Q  288 caactaacatacgccaacacca 309  Q
    | || ||||| |||||||||||    
T  19544916 ccaccaacatccgccaacacca 19544895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 185 - 312
Target Start/End: Complemental strand, 22819334 - 22819207
Alignment:
Q  185 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctc 284  Q
    ||||||||||||||||||||| |||||||||||||| || |||||||||  |||||||||||||| | ||| |||||||| | |||||| |||| |||      
T  22819334 acctccttccaccacaaagaaacactccggcccccaaccgccaacctcctgtcctcctcaccataacgcgctaccaacaccctataccacatactaccct 22819235  T
Q  285 tatcaactaacatacgccaacaccactt 312  Q
    |||| ||||| |  | ||||||||||||    
T  22819234 tatcgactaataacctccaacaccactt 22819207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 273
Target Start/End: Complemental strand, 45165177 - 45165088
Alignment:
Q  184 aacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 273  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    |||||||||| || |||||||| | ||||||    
T  45165177 aacctccttccaccaaaaagaaccactccggcctccatcctccaacctcccatccctaacaccatatctagcaaccaacaccccatacca 45165088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 4937769 - 4937666
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| ||| || |||| |||||||| |||||| ||||||||||||||||||||| |  ||||||||| ||||||| || ||||| |    
T  4937769 cctatcccatctctaatcctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccacta 4937670  T
Q  261 acac 264  Q
    ||||    
T  4937669 acac 4937666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 320
Target Start/End: Complemental strand, 6336022 - 6335886
Alignment:
Q  184 aacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacct 283  Q
    ||||||| ||||||| | |||||||||| |||||||||||||||||||||||||   | ||||||| || || |||||||| |||||||| |  || |||    
T  6336022 aacctccgtccaccaaatagaaccactctggcccccatcctccaacctcccatcgcgcacaccatacctagcaaccaacacccgataccataaccctcct 6335923  T
Q  284 ctatcaactaacatacgccaacaccacttacccaaca 320  Q
    ||||| ||||| |  |  |||||||| ||||||||||    
T  6335922 ctatctactaataatcttcaacaccatttacccaaca 6335886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 25018919 - 25018847
Alignment:
Q  201 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 273  Q
    |||||||||| || |||||| |||||||||||||| |||||||||||||||| ||||||||||| | ||||||    
T  25018919 aagaaccacttcgacccccaacctccaacctcccagcctcctcaccatatcttgccaccaacaccctatacca 25018847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 188 - 275
Target Start/End: Original strand, 34104003 - 34104090
Alignment:
Q  188 tccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaa 275  Q
    |||||||||||  |||||||||||| ||||||||||||||||||||   |||||||||| || | |||||||||||| | ||||||||    
T  34104003 tccttccaccaacaagaaccactccagcccccatcctccaacctccttgcctcctcaccgtaacgcgccaccaacaccctataccaaa 34104090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 39931197 - 39931134
Alignment:
Q  201 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacac 264  Q
    |||||| ||||||||||||||||||||||| |||||||||| ||||||| || |||||||||||    
T  39931197 aagaacaactccggcccccatcctccaaccgcccatcctccacaccatacctagccaccaacac 39931134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 235079 - 234976
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| |||  | |||| |||||||| |||||| ||||||||||||||||||||| |  |||||| || ||||||| || ||||| |    
T  235079 cctatcccatctctaatcctcactatctccctccaccacgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccacta 234980  T
Q  261 acac 264  Q
    ||||    
T  234979 acac 234976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 17721134 - 17721237
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| |||  | |||| |||||||  |||||| ||||||||||||||||||||| |  |||||| || ||||||| || |||||||    
T  17721134 cctatcccatctctaatcctcactatctccctccaccatgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccacca 17721233  T
Q  261 acac 264  Q
    ||||    
T  17721234 acac 17721237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 320
Target Start/End: Original strand, 31423101 - 31423260
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| | |  | |||| || ||||| |||||| ||||||||||||||||||||| |  |||||| || ||||||  || |||||||    
T  31423101 cctatcccatctctaatcctgactatctccctcaaccacgaagaacaactccggcccccatcctccaaaccaccatccgccacaccatgcctagccacca 31423200  T
Q  261 acactcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 320  Q
    |||| | |  ||| | |||| | |||||||||||||  ||||||||||| || |||||||    
T  31423201 acaccctacgccacaaaccatccctatcaactaacaaccgccaacaccatttccccaaca 31423260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 8752973 - 8752901
Alignment:
Q  225 ccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacat 297  Q
    ||||||||||| |||||||||||||||||||||||| ||| | |||||| || || |||||||| || |||||    
T  8752973 ccaacctcccagcctcctcaccatatctcgccaccagcaccctataccacatccctcctctatccaccaacat 8752901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 47877482 - 47877584
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| |||  | |||| |||||||| |||||| ||||||| ||||||||||||| |  |||||| || ||||||| || |||||||    
T  47877482 cctatcccatctctaatcctcactatctccctccaccacgaagaacaactccgg-ccccatcctccaaacctccatccgccacaccatacctagccacca 47877580  T
Q  261 acac 264  Q
    ||||    
T  47877581 acac 47877584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 33795966 - 33795924
Alignment:
Q  193 ccaccacaaagaaccactccggcccccatcctccaacctccca 235  Q
    ||||||| |||||||||||||||||||| ||||||||||||||    
T  33795966 ccaccacgaagaaccactccggcccccaccctccaacctccca 33795924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 273
Target Start/End: Original strand, 20349463 - 20349574
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| |||||| |||||||||   | |||| ||||||| | ||||||||||| ||||| | |||||||||||||  ||||||||||||| |  |||||||    
T  20349463 cctatcccatccctaatcttcgctatctccctccaccaaagagaaccactcctgccccta-cctccaacctccctgcctcctcaccataccgagccacca 20349561  T
Q  261 acactcgatacca 273  Q
    |||| | ||||||    
T  20349562 acaccctatacca 20349574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 23054548 - 23054476
Alignment:
Q  225 ccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacat 297  Q
    ||||||||||  |||||||||||| ||| ||| ||||||| | ||||||||  || |||||||||||||||||    
T  23054548 ccaacctccctgcctcctcaccatgtctagccgccaacaccctataccaaaaccctcctctatcaactaacat 23054476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 11276889 - 11276786
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| |||  | |||| |||||||| | |||| ||||||| ||||||||||||| |  |||||| || ||||||| || ||||| |    
T  11276889 cctatcccatctctaatcctcactatctccctccaccacgacgaacaactccgggccccatcctccaaacctccatccgccacaccatacctagccacta 11276790  T
Q  261 acac 264  Q
    ||||    
T  11276789 acac 11276786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 275
Target Start/End: Original strand, 11341326 - 11341409
Alignment:
Q  192 tccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaa 275  Q
    ||||||| || |||| ||||||||||||  |||||||||||||  ||||||||||||| || ||  ||||||| | ||||||||    
T  11341326 tccaccaaaaggaacaactccggcccccgacctccaacctccctgcctcctcaccatacctagcagccaacaccctataccaaa 11341409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 41805328 - 41805285
Alignment:
Q  232 cccatcctcctcaccatatctcgccaccaacactcgataccaaa 275  Q
    |||| |||||||||||||||||||||||||||| | ||||||||    
T  41805328 cccaacctcctcaccatatctcgccaccaacaccctataccaaa 41805285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 18767939 - 18767981
Alignment:
Q  193 ccaccacaaagaaccactccggcccccatcctccaacctccca 235  Q
    ||||||||||||| |||||||||||||  ||||||||||||||    
T  18767939 ccaccacaaagaaacactccggccccccacctccaacctccca 18767981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 34457767 - 34457725
Alignment:
Q  193 ccaccacaaagaaccactccggcccccatcctccaacctccca 235  Q
    ||||||||||||| |||||||||||||  ||||||||||||||    
T  34457767 ccaccacaaagaaacactccggccccccacctccaacctccca 34457725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 296
Target Start/End: Complemental strand, 15124443 - 15124338
Alignment:
Q  191 ttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaa 290  Q
    ||||||||||  |||| |||||| ||||||||||||||||| |||| | ||  |||||| | ||||| |||||| | |||||||| || | || |||| |    
T  15124443 ttccaccacatggaacaactccgacccccatcctccaacctaccatgcaccctaccataccgcgccaacaacaccctataccaaagactatctatatcga 15124344  T
Q  291 ctaaca 296  Q
    ||||||    
T  15124343 ctaaca 15124338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 20918482 - 20918547
Alignment:
Q  184 aacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccata 249  Q
    ||||||| |||||||||||||||||||||| |||||| |   |||||||||  ||| |||||||||    
T  20918482 aacctccctccaccacaaagaaccactccgacccccaactggcaacctccctgccttctcaccata 20918547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 309
Target Start/End: Original strand, 45993115 - 45993222
Alignment:
Q  201 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacg 300  Q
    |||||| ||||||||||| | ||||||||||||||  | |||| ||||| |  || || || |||| |||||||| |||||| ||||| |||||||| |     
T  45993115 aagaacaactccggccccaa-cctccaacctcccacacacctcgccataacgggcgactaaaactctataccaaaaaccacccctatccactaacatcct 45993213  T
Q  301 ccaacacca 309  Q
    |||||||||    
T  45993214 ccaacacca 45993222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 77 - 320
Target Start/End: Complemental strand, 7956396 - 7956153
Alignment:
Q  77 caccacagatcatgccaaaaaagagtagactccccatcccccacacgacgcaccacaccctcattaaaccaaccaacaccgccccc-taccccatctcta 175  Q
    |||||| |||||||||||||||| || || | |||| ||||||||||||||||||||| |||| ||||||||||  |||||||||| |||||| ||||||    
T  7956396 caccaccgatcatgccaaaaaagcgttgatttcccaccccccacacgacgcaccacacactcactaaaccaaccttcaccgcccccctaccccttctcta 7956297  T
Q  176 atcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaa 275  Q
    ||||||| ||||| ||||||||| ||||||||||||||||| | ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  7956296 atcttcacaaccttcttccaccataaagaaccactccggcctc-atcctccaacctcccgtcctcctcaccatatctagccaccaacactcgataccaaa 7956198  T
Q  276 taccacctctatcaactaacatacgccaacaccacttacccaaca 320  Q
     |||| ||||||||||||||||||||||||| |||||||||||||    
T  7956197 gaccatctctatcaactaacatacgccaacatcacttacccaaca 7956153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 84 - 318
Target Start/End: Original strand, 18588771 - 18589005
Alignment:
Q  84 gatcatgccaaaaaagagtagactccccatcccccacacgacgcaccacaccctcattaaaccaaccaacaccgccccctaccccatctctaatcttcat 183  Q
    |||||||||||||||| || || |||||||||| |||||  |||||||||| |||| ||||||| ||| |||||||||| | |||||||||||| ||||     
T  18588771 gatcatgccaaaaaagcgttgattccccatcccgcacacatcgcaccacacactcactaaaccatccatcaccgccccccaacccatctctaatattcac 18588870  T
Q  184 aacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacct 283  Q
    |||||||| |||||| |||||||||   || |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |  ||  ||    
T  18588871 aacctcctcccaccataaagaaccaacacgacccccatcctccaacctcccgtcctcctcaccatatctagccaccaacactcgataccataacccgtct 18588970  T
Q  284 ctatcaactaacatacgccaacaccacttacccaa 318  Q
    ||||||||||||| |||||||||||||||||||||    
T  18588971 ctatcaactaacaaacgccaacaccacttacccaa 18589005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 166 - 320
Target Start/End: Original strand, 32186187 - 32186341
Alignment:
Q  166 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacact 265  Q
    |||||| ||||||||||  |||||| |||||||  ||||| |||||||||||||| |||||||||||||| || |||||| ||||||||||||||||||     
T  32186187 cccatccctaatcttcactacctccctccaccaagaagaagcactccggcccccaacctccaacctcccagccacctcactatatctcgccaccaacacc 32186286  T
Q  266 cgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 320  Q
    | ||||||||  ||||||||||| || ||||   |||||||||| ||| ||||||    
T  32186287 ctataccaaaacccacctctatccaccaacaactgccaacaccatttatccaaca 32186341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 161 - 317
Target Start/End: Original strand, 19350443 - 19350599
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    ||||| ||||| |||||||||   ||||||||||||||  | ||  |||||||||||||| |||||||||||||  ||||||||||||||||||||||||    
T  19350443 cctactccatccctaatcttcgctacctccttccaccaagatgatacactccggcccccaacctccaacctccctgcctcctcaccatatctcgccacca 19350542  T
Q  261 acactcgataccaaataccacctctatcaactaacatacgccaacaccacttaccca 317  Q
    |||| | ||||||||  ||||||||||| |  ||||  ||||||||||| |||||||    
T  19350543 acaccctataccaaaacccacctctatctatcaacaaccgccaacaccatttaccca 19350599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 10362672 - 10362732
Alignment:
Q  201 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaa 261  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  10362672 aagaaccactccggccccccacctccaacctcccatcctcctcaccatatctcgccaccaa 10362732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 166 - 320
Target Start/End: Complemental strand, 14843773 - 14843619
Alignment:
Q  166 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacact 265  Q
    |||||| ||||||||||  || |||||||||||  | |||  |||||| |||||  |||||||||||||   |||||||||||||||||| |||| |||     
T  14843773 cccatccctaatcttcactacttccttccaccaagatgaagtactccgtccccctacctccaacctccctgtctcctcaccatatctcgctaccagcacc 14843674  T
Q  266 cgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 320  Q
    | |||||||| |||| ||||||| || ||||| ||||||||||| ||||| ||||    
T  14843673 ctataccaaaaaccatctctatctaccaacattcgccaacaccatttacctaaca 14843619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 278
Target Start/End: Original strand, 29056042 - 29056135
Alignment:
Q  185 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaatac 278  Q
    ||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||| |  || |||||||| | |||||| ||||    
T  29056042 acctccttccaccacgaagaaacactccggcccccaaccgccaacctcccatcctcctcaccataacgtgctaccaacaccctataccacatac 29056135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 185 - 265
Target Start/End: Complemental strand, 12673735 - 12673655
Alignment:
Q  185 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacact 265  Q
    |||||||||||||||||||| | |||||| | ||||||||||||||||  ||||||||||||||| || ||||||||||||    
T  12673735 acctccttccaccacaaagagcaactccgactcccatcctccaacctcatatcctcctcaccatacctagccaccaacact 12673655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 215 - 317
Target Start/End: Complemental strand, 29976595 - 29976493
Alignment:
Q  215 cccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgccaacaccacttac 314  Q
    |||||| |||||||||||||  |||||||||||||||||||||||||||| | ||||||||  ||||||||||| |  ||||  ||||||| ||| ||||    
T  29976595 cccccaacctccaacctccctgcctcctcaccatatctcgccaccaacaccctataccaaaacccacctctatctatcaacaaccgccaacgccatttac 29976496  T
Q  315 cca 317  Q
    |||    
T  29976495 cca 29976493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 273
Target Start/End: Original strand, 26514223 - 26514335
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| |||||| |||||||||   | |||| ||||||| | ||||||||||||||||||| ||||||| |||||  ||||||||||||| |  |||||||    
T  26514223 cctatcccatccctaatcttcgctatctccctccaccaaatagaaccactccggcccccaacctccaaactccctgcctcctcaccataccgagccacca 26514322  T
Q  261 acactcgatacca 273  Q
    |||||| ||||||    
T  26514323 acactctatacca 26514335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 225 - 320
Target Start/End: Original strand, 34434823 - 34434918
Alignment:
Q  225 ccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 320  Q
    ||||||||||||||||||||||||||||||||||||| || | |||||| |||| ||  || || || ||||| ||||||||||| ||||| ||||    
T  34434823 ccaacctcccatcctcctcaccatatctcgccaccaaaaccctataccatatactactcctctctaccaacatccgccaacaccatttacctaaca 34434918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 294
Target Start/End: Original strand, 15602846 - 15602956
Alignment:
Q  184 aacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacct 283  Q
    ||||||| ||||||| | ||||||||||||||||||||||||||||||||||||   | ||||||| || || ||||||||  ||||||| |  || | |    
T  15602846 aacctccatccaccaaatagaaccactccggcccccatcctccaacctcccatcacgcacaccatacctagcaaccaacacctgataccataaccctctt 15602945  T
Q  284 ctatcaactaa 294  Q
    |||||||||||    
T  15602946 ctatcaactaa 15602956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 2554105 - 2554208
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||| | |||| | |||| |||||||| |||||| ||||||||||||||||||||| |  |||||| || ||||||| || ||||| |    
T  2554105 cctatcccatctctaaccctcattatctccctccaccacgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccacta 2554204  T
Q  261 acac 264  Q
    ||||    
T  2554205 acac 2554208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 13086044 - 13086111
Alignment:
Q  167 ccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctccc 234  Q
    |||||||||||| ||   |||||||||||||| ||||||| ||||||||||||| |||||||||||||    
T  13086044 ccatctctaatcctccctacctccttccaccaaaaagaacaactccggcccccaacctccaacctccc 13086111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 312
Target Start/End: Complemental strand, 17078807 - 17078680
Alignment:
Q  185 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctc 284  Q
    |||||| |||||||  |||||| ||||||||||||| |||||||||||||| |  | || ||||| |  || || || ||||||||||||| |||||  |    
T  17078807 acctccctccaccaagaagaacaactccggcccccaacctccaacctcccacctacttcgccataacgggcgactaagactcgataccaaaaaccactcc 17078708  T
Q  285 tatcaactaacatacgccaacaccactt 312  Q
    ||||||||| ||| | ||||||||||||    
T  17078707 tatcaactagcatcctccaacaccactt 17078680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 320
Target Start/End: Complemental strand, 17605975 - 17605816
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| ||| || |||| ||||| |  |||||| ||||||||||||||||||||| |  ||||||||| | ||||| || |||| ||    
T  17605975 cctatcccatctctaatcctcacaatctccctccacaaagaagaacaactccggcccccatcctccaaaccaccatcctccacgccatacctagccaaca 17605876  T
Q  261 acactcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 320  Q
    |||| | |  ||| | ||| || |||||||||||||  | ||||||||| || |||||||    
T  17605875 acaccctactccacaaacctcccctatcaactaacagccaccaacaccatttccccaaca 17605816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 273
Target Start/End: Original strand, 25350755 - 25350833
Alignment:
Q  195 accacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 273  Q
    |||| |||||| |||||||||||||  || ||||||||||| ||||||||||||| | |||||||||||| | ||||||    
T  25350755 accaaaaagaatcactccggccccctaccaccaacctcccagcctcctcaccataccgcgccaccaacaccctatacca 25350833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 309
Target Start/End: Complemental strand, 503133 - 503025
Alignment:
Q  201 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacg 300  Q
    |||||| ||||||||||||||||||||||||||||  | |||| ||||| |  || || || |||| ||| |||| |||||| ||||| |||||||| |     
T  503133 aagaacaactccggcccccatcctccaacctcccacacacctcgccataacgggcgactaaaactctatatcaaaaaccacccctatccactaacatcct 503034  T
Q  301 ccaacacca 309  Q
    |||||||||    
T  503033 ccaacacca 503025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 320
Target Start/End: Complemental strand, 10576891 - 10576732
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| | |  | |||| |||||||| |||| | ||||||||||||||||||||| |  |||||| || ||||||| || |||| ||    
T  10576891 cctatcccatctctaatcctaactatctccctccaccacgaagagcaactccggcccccatcctccaaaccaccatccgccacaccatacctagccaaca 10576792  T
Q  261 acactcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 320  Q
    |||| | |  ||  | ||| || |||||||||||||  ||||||||||| || |||||||    
T  10576791 acaccctactccgcaaacctcccctatcaactaacagccgccaacaccatttccccaaca 10576732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 320
Target Start/End: Complemental strand, 11060479 - 11060344
Alignment:
Q  185 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctc 284  Q
    |||||| |||||||  |||||| ||||||||||||| |||||||||||||| |    || ||||| |  || || || |||||||||||||  ||||  |    
T  11060479 acctccctccaccaagaagaacaactccggcccccaacctccaacctcccacctaattcgccataacgggcaactaagactcgataccaaaagccactcc 11060380  T
Q  285 tatcaactaacatacgccaacaccacttacccaaca 320  Q
    ||||||||| ||| | ||||||||||||||| ||||    
T  11060379 tatcaactagcatcctccaacaccacttacctaaca 11060344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 311
Target Start/End: Complemental strand, 10920041 - 10919955
Alignment:
Q  225 ccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgccaacaccact 311  Q
    ||||||||||  ||||||||||||| || || |||||||| | ||||||||  || ||||||||||| ||||| | |||||||||||    
T  10920041 ccaacctccccgcctcctcaccatacctagcaaccaacaccctataccaaaacccccctctatcaaccaacatcctccaacaccact 10919955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 10922078 - 10922144
Alignment:
Q  187 ctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctc 253  Q
    |||| |||||||  |||||| ||||||||||||||||| || ||| ||||||||| |||||||||||    
T  10922078 ctccctccaccaagaagaacaactccggcccccatccttcagccttccatcctccacaccatatctc 10922144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 23065663 - 23065613
Alignment:
Q  185 acctccttccaccacaaagaaccactccggcccccatcctccaacctccca 235  Q
    ||||||| ||||||| |||||||||||||||||||  ||||||||||||||    
T  23065663 acctcctgccaccacgaagaaccactccggccccccacctccaacctccca 23065613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 320
Target Start/End: Complemental strand, 1104570 - 1104429
Alignment:
Q  179 ttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaatac 278  Q
    |||| ||| ||| ||||| ||||||||| |||| |||||||| || |||||||| |  ||||||||||||| |  || |||| ||| | |||||| | ||    
T  1104570 ttcacaacttccctccacaacaaagaactactcaggcccccaaccaccaacctcactgcctcctcaccataacgagcaaccatcaccctataccacaaac 1104471  T
Q  279 cacctctatcaactaacatacgccaacaccacttacccaaca 320  Q
    ||| |||||  ||||||| || ||||||||| ||||| ||||    
T  1104470 cacatctatttactaacaaactccaacaccatttacctaaca 1104429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 320
Target Start/End: Complemental strand, 17577333 - 17577200
Alignment:
Q  187 ctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctcta 286  Q
    |||| ||||||||||||||| |||| |||||||||||||||| |   |||||||| | ||||| || |||| |||||| | |  ||| | ||| || |||    
T  17577333 ctccctccaccacaaagaacaactctggcccccatcctccaaaccatcatcctccacgccatacctagccaacaacaccctactccacaaacctccccta 17577234  T
Q  287 tcaactaacatacgccaacaccacttacccaaca 320  Q
    ||||||||||  | ||||||||| || |||||||    
T  17577233 tcaactaacagcctccaacaccatttccccaaca 17577200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 309
Target Start/End: Original strand, 19256179 - 19256287
Alignment:
Q  201 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacg 300  Q
    |||||| |||| |||||||| ||||||||||||||  | |||| ||||| |  || || || |||| |||||||| |||||| ||||| |||||||| |     
T  19256179 aagaacaactctggcccccaacctccaacctcccacacacctcgccataacgggcgactaaaactctataccaaaaaccacccctatccactaacatcct 19256278  T
Q  301 ccaacacca 309  Q
    |||||||||    
T  19256279 ccaacacca 19256287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 13938218 - 13938321
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| |||  | ||||| ||||||  | |||| ||||||||||||||||||||| |  |||||| || ||||||| || ||||| |    
T  13938218 cctatcccatctctaatcctcactatctcctgccaccaagatgaacaactccggcccccatcctccaaaccaccatccgccgcaccatacctagccacta 13938317  T
Q  261 acac 264  Q
    ||||    
T  13938318 acac 13938321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 18682175 - 18682112
Alignment:
Q  201 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacac 264  Q
    |||||| ||||||||||||||||||||| |  |||||||||  |||||| || |||||||||||    
T  18682175 aagaacaactccggcccccatcctccaaacctccatcctccgaaccatacctggccaccaacac 18682112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 235
Target Start/End: Original strand, 8264762 - 8264796
Alignment:
Q  201 aagaaccactccggcccccatcctccaacctccca 235  Q
    |||||| ||||||||||||||||||||||||||||    
T  8264762 aagaacaactccggcccccatcctccaacctccca 8264796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 18051066 - 18051016
Alignment:
Q  185 acctccttccaccacaaagaaccactccggcccccatcctccaacctccca 235  Q
    |||||| |||||||  |||||| ||||||||||||| ||||||||||||||    
T  18051066 acctccctccaccaagaagaacaactccggcccccaacctccaacctccca 18051016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 264
Target Start/End: Complemental strand, 14372606 - 14372529
Alignment:
Q  187 ctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacac 264  Q
    |||| |||||||  |||||| ||||||||||||||||||||| ||  | ||| || ||||||| || |||||||||||    
T  14372606 ctccctccaccaagaagaacaactccggcccccatcctccaaactttcgtccgccacaccatacctagccaccaacac 14372529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 21629743 - 21629682
Alignment:
Q  166 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctcca 227  Q
    ||||||||||||| | | || |||| |||||||| |||| | ||||||||||||||||||||    
T  21629743 cccatctctaatcctaacaatctccctccaccacgaagagcaactccggcccccatcctcca 21629682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 309
Target Start/End: Original strand, 33640457 - 33640564
Alignment:
Q  201 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacg 300  Q
    |||||| ||||||||||| | ||||||||||||||  | |||| ||||| |  || || || |||| |||||||| |||||| ||||| |||||||| |     
T  33640457 aagaacaactccggccccaa-cctccaacctcccacacacctcgccataacgggcgactaaaactctataccaaaaaccacccctatccactaacatcct 33640555  T
Q  301 ccaacacca 309  Q
    |||||||||    
T  33640556 ccaacacca 33640564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 297
Target Start/End: Original strand, 34180499 - 34180559
Alignment:
Q  237 cctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacat 297  Q
    |||||||||||||||| ||  ||||||| | |||| ||| ||| |||||||||||||||||    
T  34180499 cctcctcaccatatctagcagccaacaccctatacgaaagacctcctctatcaactaacat 34180559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 159 - 320
Target Start/End: Original strand, 7098979 - 7099140
Alignment:
Q  159 cccctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccac 258  Q
    |||| |||||||| |||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||| || |     
T  7098979 ccccaaccccatccctaatcttcacaacctccttccaccaaatagaaccactccggcccccatcctccaacctctcatcctcctcaccatatctagctat 7099078  T
Q  259 caacactcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 320  Q
    ||| || |||||||| | |||  ||| ||||||||||| || ||||||| |||| |||||||    
T  7099079 caaaacccgataccacaaaccctctcgatcaactaacaaactccaacacaactttcccaaca 7099140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 185 - 293
Target Start/End: Original strand, 9777893 - 9778001
Alignment:
Q  185 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctc 284  Q
    ||||||||||||||||||||| |||||||||||||| ||  |||||||||||||||||||| ||| | ||| |||||||| | |||||| |||| ||||     
T  9777893 acctccttccaccacaaagaaacactccggcccccaaccgtcaacctcccatcctcctcactataacgcgctaccaacaccctataccatatactacctt 9777992  T
Q  285 tatcaacta 293  Q
    |||||||||    
T  9777993 tatcaacta 9778001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 166 - 297
Target Start/End: Complemental strand, 29553376 - 29553245
Alignment:
Q  166 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacact 265  Q
    |||||| ||||||| | ||||||||  |||||||||||||||||||||||||||||||||||||||||||    |||||||||| |  |  || || |||    
T  29553376 cccatccctaatctgcctaacctcccgccaccacaaagaaccactccggcccccatcctccaacctcccacaaacctcaccataacgggtgactaaaact 29553277  T
Q  266 cgataccaaataccacctctatcaactaacat 297  Q
    | |||||||| |||||||||||| ||||||||    
T  29553276 ctataccaaaaaccacctctatccactaacat 29553245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 184 - 273
Target Start/End: Original strand, 40688588 - 40688677
Alignment:
Q  184 aacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 273  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    ||||||||||  | |||||||| ||||||||    
T  40688588 aacctccttccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctaccaaccaacacccgatacca 40688677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 273
Target Start/End: Complemental strand, 19162795 - 19162706
Alignment:
Q  184 aacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 273  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    |||||||||| || |||||||| | ||||||    
T  19162795 aacctccttccaccaaaaagaaccactccggcccccatcctccaacctcccgtccctaacaccatatctagcaaccaacaccctatacca 19162706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 320
Target Start/End: Original strand, 9690921 - 9691080
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    ||||| ||||| |||||||||   | |||| |||||||   |||| |||||||||||||| |||||||||||||| |||||||||||||||| || || |    
T  9690921 cctacaccatccctaatcttcgctatctccctccaccaatgagaaacactccggcccccaacctccaacctcccagcctcctcaccatatctagctacta 9691020  T
Q  261 acactcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 320  Q
     ||| | ||||||||  |||| |||||| || ||||  | ||||||||| ||||||||||    
T  9691021 gcaccctataccaaaacccacatctatccaccaacaacctccaacaccatttacccaaca 9691080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 23642232 - 23642129
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| ||| || |||| |||||||| |||||| ||||||||||||||||||||| |  ||||||||| ||||||| || ||||| |    
T  23642232 cctatcccatctctaatcctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccacta 23642133  T
Q  261 acac 264  Q
    ||||    
T  23642132 acac 23642129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 23647890 - 23647787
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| ||| || |||| |||||||| |||||| ||||||||||||||||||||| |  ||||||||| ||||||| || ||||| |    
T  23647890 cctatcccatctctaatcctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccacta 23647791  T
Q  261 acac 264  Q
    ||||    
T  23647790 acac 23647787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 47419303 - 47419406
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| ||| || |||| |||||||| |||||| ||||||||||||||||||||| |  ||||||||| ||||||| || ||||| |    
T  47419303 cctatcccatctctaatcctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccacta 47419402  T
Q  261 acac 264  Q
    ||||    
T  47419403 acac 47419406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 161 - 315
Target Start/End: Original strand, 2072039 - 2072193
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||||||| || ||||||||||  | |||| |||||||  ||||| ||||||| |||||| |||| |||||||   ||||||||||||||||||||||||    
T  2072039 cctaccccgtccctaatcttcactaactccctccaccagcaagaaacactccgtcccccaacctctaacctccttgcctcctcaccatatctcgccacca 2072138  T
Q  261 acactcgataccaaataccacctctatcaactaacatacgccaacaccacttacc 315  Q
     ||| | |||||| || || |||||||| || |||||  |||| ||||| |||||    
T  2072139 gcaccctataccacatccctcctctatccaccaacatctgccatcaccatttacc 2072193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 48805501 - 48805562
Alignment:
Q  185 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcacc 246  Q
    ||||||||||||||||||||||||||||||| ||||  |||||||||||||||| |||||||    
T  48805501 acctccttccaccacaaagaaccactccggcacccaatctccaacctcccatccacctcacc 48805562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 297
Target Start/End: Original strand, 2365545 - 2365641
Alignment:
Q  201 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacat 297  Q
    ||||||||||||| |||||||||| |||||||||  ||||||||||||| |  || |||||||| | |||||| | ||| |||||||||||||||||    
T  2365545 aagaaccactccgacccccatccttcaacctccctacctcctcaccataacgagcaaccaacaccctataccataaacctcctctatcaactaacat 2365641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 309
Target Start/End: Complemental strand, 55725321 - 55725199
Alignment:
Q  187 ctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctcta 286  Q
    |||| |||||||  |||||| ||||||||||||||||||||| |  ||||||||| ||||||| || ||||||||||| | |||||| |  ||| |||||    
T  55725321 ctccctccaccaagaagaacaactccggcccccatcctccaaaccaccatcctccacaccatacctagccaccaacaccctataccataatccatctcta 55725222  T
Q  287 tcaactaacatacgccaacacca 309  Q
    || |||||||  | |||||||||    
T  55725221 tctactaacaacctccaacacca 55725199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 38296258 - 38296319
Alignment:
Q  214 gcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaa 275  Q
    ||||||| ||||||||||||||| | ||||||||||||||||||||||||| | ||||||||    
T  38296258 gcccccaacctccaacctcccattcacctcaccatatctcgccaccaacaccctataccaaa 38296319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 309
Target Start/End: Original strand, 8935613 - 8935721
Alignment:
Q  201 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacg 300  Q
    |||||| ||||||||||||||||||||||||||||  | |||| ||||| |  || || || |||| |||||||| |||||| ||||| |||||||| |     
T  8935613 aagaacaactccggcccccatcctccaacctcccacacacctcgccataacgagcgactaaaactctataccaaaaaccacccctatccactaacatcct 8935712  T
Q  301 ccaacacca 309  Q
    |||||||||    
T  8935713 ccaacacca 8935721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 36183077 - 36183133
Alignment:
Q  202 agaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccac 258  Q
    |||| |||||||||||||| ||||||||| ||||||||||||||||||||| |||||    
T  36183077 agaaacactccggcccccaacctccaaccgcccatcctcctcaccatatcttgccac 36183133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 5789733 - 5789630
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||||||| || ||||  ||||||  |||||| ||||||||||||||||||||| |  ||| ||||| ||||||| || ||||| |    
T  5789733 cctatcccatctctaatcttcacaatctcccgccaccaagaagaacaactccggcccccatcctccaaacctccaccctccacaccatacctagccacta 5789634  T
Q  261 acac 264  Q
    ||||    
T  5789633 acac 5789630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 19755766 - 19755869
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| |||  | |||| |||||||| |||||| ||||||||||||||||||||| |  |||||| || ||||||| || ||||| |    
T  19755766 cctatcccatctctaatcctcactatctccctccaccacgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccacta 19755865  T
Q  261 acac 264  Q
    ||||    
T  19755866 acac 19755869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 19784040 - 19783937
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| |||  | |||| |||||||| |||||| ||||||||||||||||||||| |  |||||| || ||||||| || ||||| |    
T  19784040 cctatcccatctctaatcctcactatctccctccaccacgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccacta 19783941  T
Q  261 acac 264  Q
    ||||    
T  19783940 acac 19783937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 264
Target Start/End: Original strand, 48312619 - 48312696
Alignment:
Q  187 ctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacac 264  Q
    |||| |||||||| |||||| ||||||||||||||||||||| |  |||||| || ||||||| || |||||||||||    
T  48312619 ctccctccaccacgaagaacaactccggcccccatcctccaaaccaccatccgccacaccatacctagccaccaacac 48312696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 320
Target Start/End: Original strand, 54685140 - 54685268
Alignment:
Q  192 tccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaac 291  Q
    ||||||| | |||||||||| |||||||||||||||||||||||||   | ||||||| || || ||||||||  ||||||| |  || | |||||||||    
T  54685140 tccaccaaatagaaccactctggcccccatcctccaacctcccatcacgcacaccatacctagcaaccaacacctgataccataaccctcttctatcaac 54685239  T
Q  292 taacatacgccaacaccacttacccaaca 320  Q
    ||| |  | ||||||||| || |||||||    
T  54685240 taataatctccaacaccatttccccaaca 54685268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 297
Target Start/End: Original strand, 23657800 - 23657932
Alignment:
Q  165 ccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacac 264  Q
    ||||||| |||||| || | ||||||  ||||||  |||||| ||| ||||||||||||||||||||||||  | |||| | ||| |  || || || ||    
T  23657800 ccccatccctaatcctcctcacctcccgccaccaagaagaacaacttcggcccccatcctccaacctcccacacacctcgctataacgggcgactaaaac 23657899  T
Q  265 tcgataccaaataccacctctatcaactaacat 297  Q
    || |||||||| |||||| ||||| ||||||||    
T  23657900 tctataccaaaaaccacccctatccactaacat 23657932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 309
Target Start/End: Complemental strand, 54482800 - 54482652
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| | |  | |||| |||||||| |||||| |||||| |||||||||||||| |  |||||  || ||||||| || |||||||    
T  54482800 cctatcccatctctaatcctgactatctccctccaccacgaagaacaactccgacccccatcctccaaaccaccatctgccacaccatacctagccacca 54482701  T
Q  261 acactcgataccaaataccacctctatcaactaacatacgccaacacca 309  Q
    |||| | |  ||| |  ||  |||||||||||||||  |||||||||||    
T  54482700 acaccctacgccataacccctctctatcaactaacaaccgccaacacca 54482652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 1828181 - 1828078
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| |||  | ||||  ||||||  |||||| |||||||||||||||| |||| |  ||||||||| ||||||| || ||||| |    
T  1828181 cctatcccatctctaatcctcactatctcccgccaccaagaagaacaactccggcccccatccgccaaacctccatcctccacaccatacctagccacta 1828082  T
Q  261 acac 264  Q
    ||||    
T  1828081 acac 1828078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 249
Target Start/End: Original strand, 41382513 - 41382560
Alignment:
Q  202 agaaccactccggcccccatcctccaacctcccatcctcctcaccata 249  Q
    |||| |||||||||||||| ||||||||| |||| |||||||||||||    
T  41382513 agaaacactccggcccccaacctccaaccgcccagcctcctcaccata 41382560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 49925904 - 49925834
Alignment:
Q  165 ccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctccca 235  Q
    ||||||| |||||||||   ||||||  ||||||  |||||| ||||||||||||| ||||||||||||||    
T  49925904 ccccatccctaatcttccccacctcccgccaccaagaagaacaactccggcccccaacctccaacctccca 49925834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 52617460 - 52617406
Alignment:
Q  207 cactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaa 261  Q
    |||||||||| | | ||||||||||| |  |||||||||||||||||||||||||    
T  52617460 cactccggcctctaacctccaacctctctgcctcctcaccatatctcgccaccaa 52617406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 56337100 - 56337046
Alignment:
Q  202 agaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgcc 256  Q
    |||| ||||||| |||||| ||||||||| |||| ||||||||||||| ||||||    
T  56337100 agaaacactccgacccccaacctccaaccgcccagcctcctcaccatacctcgcc 56337046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 4524243 - 4524194
Alignment:
Q  185 acctccttccaccacaaagaaccactccggcccccatcctccaacctccc 234  Q
    ||||||| ||||||  |||||| ||||||||||||| |||||||||||||    
T  4524243 acctcctgccaccaagaagaacaactccggcccccaacctccaacctccc 4524194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 29328387 - 29328318
Alignment:
Q  193 ccaccacaaagaaccactccggcccc-catcctccaacctcccatcctcctcaccatatctcgccaccaa 261  Q
    |||||| ||||||||||||||||| | |  |||||||||||||  ||||||||||||| ||||| |||||    
T  29328387 ccaccaaaaagaaccactccggcctctccacctccaacctccccacctcctcaccatacctcgcgaccaa 29328318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 26694459 - 26694503
Alignment:
Q  193 ccaccacaaagaaccactccggcccccatcctccaacctcccatc 237  Q
    ||||||||||||| |||||| ||||||  ||||||||||||||||    
T  26694459 ccaccacaaagaaacactccagccccccacctccaacctcccatc 26694503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 185 - 320
Target Start/End: Complemental strand, 22191399 - 22191264
Alignment:
Q  185 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctc 284  Q
    ||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||| | |||||||||||| | |||||| |||| |||      
T  22191399 acctccttccaccacgaagaaacactccggcccccaaccaccaacctcccatcctcctcaccataacacgccaccaacaccctataccacatactaccct 22191300  T
Q  285 tatcaactaacatacgccaacaccacttacccaaca 320  Q
    |||||||||| |  | ||||||||| ||||| ||||    
T  22191299 tatcaactaataacctccaacaccatttacctaaca 22191264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 166 - 320
Target Start/End: Complemental strand, 3544737 - 3544583
Alignment:
Q  166 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacact 265  Q
    |||||| ||||||||||  || |||||||||||  | |||  ||||||||||||  |||||||||||||  ||||||||||||||||||| |||| |||     
T  3544737 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcacc 3544638  T
Q  266 cgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 320  Q
    | |||||||| |||| ||||||| || ||||| ||||||||||| ||||| ||||    
T  3544637 ctataccaaaaaccatctctatctaccaacattcgccaacaccatttacctaaca 3544583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 164 - 315
Target Start/End: Complemental strand, 19014621 - 19014471
Alignment:
Q  164 accccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaaca 263  Q
    |||||||| ||||||||||  | |||| |||||||  ||||| |||||||||||| | |||||||||||||   ||||||||||||||||||||||||||    
T  19014621 accccatccctaatcttcactatctccctccaccaagaagaaacactccggccccaa-cctccaacctccctgtctcctcaccatatctcgccaccaaca 19014523  T
Q  264 ctcgataccaaataccacctctatcaactaacatacgccaacaccacttacc 315  Q
    ||  ||||||||  |||||||| || || ||||| ||||||| ||| |||||    
T  19014522 cttaataccaaaacccacctctgtccaccaacatccgccaactccatttacc 19014471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 185 - 288
Target Start/End: Original strand, 3074268 - 3074371
Alignment:
Q  185 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctc 284  Q
    ||||||||||||||| ||||| |||||||| ||||| || ||||||||||||||||||||||||| | ||| |||||||| | |||||| |||| ||||     
T  3074268 acctccttccaccacgaagaaacactccggtccccaaccgccaacctcccatcctcctcaccataacgcgctaccaacaccctataccacatactacctt 3074367  T
Q  285 tatc 288  Q
    ||||    
T  3074368 tatc 3074371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 317
Target Start/End: Original strand, 28358435 - 28358545
Alignment:
Q  207 cactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgccaaca 306  Q
    |||||||||||||| |||||||||||||  |||||||||||||||||||||||||||| |  |||||||  || |||||||| || ||||  | ||||||    
T  28358435 cactccggcccccaacctccaacctccctgcctcctcaccatatctcgccaccaacaccctgtaccaaaacccgcctctatctaccaacaatctccaaca 28358534  T
Q  307 ccacttaccca 317  Q
    ||| |||||||    
T  28358535 ccatttaccca 28358545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 294
Target Start/End: Original strand, 21405360 - 21405469
Alignment:
Q  185 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctc 284  Q
    ||||||||||||||| ||||| ||||| |||||||| || ||||||||||||||||||||||||| |  || |||||||| | |||||| |||| |||      
T  21405360 acctccttccaccacgaagaaacactctggcccccaaccaccaacctcccatcctcctcaccataacgtgctaccaacaccctataccacatactaccct 21405459  T
Q  285 tatcaactaa 294  Q
    ||||||||||    
T  21405460 tatcaactaa 21405469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 45270783 - 45270840
Alignment:
Q  204 aaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaa 261  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  45270783 aaccactccggcccccaacctccaacctcccatcctcctcatcatatctcgccaccaa 45270840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 6051102 - 6051205
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| ||| || |||| |||||||| |||||| ||||||||||||||||||||| |  ||||||||| ||||||| || ||||| |    
T  6051102 cctatcccatctctaatcctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccacta 6051201  T
Q  261 acac 264  Q
    ||||    
T  6051202 acac 6051205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 320
Target Start/End: Complemental strand, 1248223 - 1248068
Alignment:
Q  164 accccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaaca 263  Q
    |||||||| ||||||||||  || ||| |||||||  | |||  ||||| ||||| | |||||||||||||  |||||||||||||||||||||||||||    
T  1248223 accccatccctaatcttcactacttccctccaccaagatgaagtactccagccccta-cctccaacctccctacctcctcaccatatctcgccaccaaca 1248125  T
Q  264 ctcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 320  Q
      | |||||||| ||||||| |||| || || |||| ||||||| | ||||| ||||    
T  1248124 gcctataccaaaaaccacctttatccaccaatatacaccaacactatttacctaaca 1248068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 309
Target Start/End: Complemental strand, 25504631 - 25504487
Alignment:
Q  165 ccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacac 264  Q
    ||||||| |||||||||  |||||||  ||||||  |||||| |||| |||||||| ||||||||||||||  | |||| ||||| |  || || || ||    
T  25504631 ccccatccctaatcttcccaacctcccgccaccaagaagaacaactctggcccccaacctccaacctcccacacacctcgccataacgggcgactaaaac 25504532  T
Q  265 tcgataccaaataccacctctatcaactaacatacgccaacacca 309  Q
    || |||||||| |||||| ||||| |||||||| | |||||||||    
T  25504531 tctataccaaaaaccacccctatccactaacatcctccaacacca 25504487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 309
Target Start/End: Original strand, 38070372 - 38070479
Alignment:
Q  202 agaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgc 301  Q
    |||| ||||||| |||||| ||||||||| |||| ||||||||||||| || |||||||| |||| |||||| |  || |||||||| || ||||  |||    
T  38070372 agaaacactccgacccccaacctccaaccgcccagcctcctcaccataccttgccaccaaaactctataccacaaccctcctctatccaccaacaaccgc 38070471  T
Q  302 caacacca 309  Q
    ||||||||    
T  38070472 caacacca 38070479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 35541548 - 35541614
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctcca 227  Q
    |||| ||||||||||||| |||  | |||| |||||||| |||||| ||||||||||||||||||||    
T  35541548 cctatcccatctctaatcctcacgatctccctccaccacgaagaacaactccggcccccatcctcca 35541614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 5809080 - 5809168
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccata 249  Q
    ||||||||||| ||||||||||  || |||| |||| |  | ||| |||||||||||||| |||||||||||||| ||| | |||||||    
T  5809080 cctaccccatccctaatcttcactacttcctgccactaagatgaaacactccggcccccaacctccaacctcccaaccttcacaccata 5809168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 235
Target Start/End: Original strand, 39430782 - 39430850
Alignment:
Q  167 ccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctccca 235  Q
    |||||||||||| ||   |||||| |||||||  |||||| ||||||||||||| ||||||||||||||    
T  39430782 ccatctctaatcctccccacctccctccaccaataagaacaactccggcccccaacctccaacctccca 39430850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 43944012 - 43943960
Alignment:
Q  268 ataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 320  Q
    |||||| | |||| |||||||||||||||| | ||||||||||||||||||||    
T  43944012 ataccacaaaccatctctatcaactaacatcctccaacaccacttacccaaca 43943960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 320
Target Start/End: Complemental strand, 13867442 - 13867315
Alignment:
Q  193 ccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaact 292  Q
    ||||||| | ||| |||||| ||||||| ||||||||| |||| ||  ||||||||| |  || ||||  || | |||||| | |||||||||||| ||     
T  13867442 ccaccacgatgaaacactcctgcccccaacctccaaccgcccagccgtctcaccataccgagctaccaggaccctataccataaaccacctctatccacc 13867343  T
Q  293 aacatacgccaacaccacttacccaaca 320  Q
    ||||| ||||||||||| ||||| ||||    
T  13867342 aacatccgccaacaccatttacctaaca 13867315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 273
Target Start/End: Complemental strand, 40563150 - 40563087
Alignment:
Q  210 tccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 273  Q
    ||||||||||| ||||||||||| |  |||| || ||||||||||||||||| |||| ||||||    
T  40563150 tccggcccccaacctccaacctctctgcctcatctccatatctcgccaccaaaactctatacca 40563087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 49264599 - 49264532
Alignment:
Q  167 ccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctccc 234  Q
    |||||||||||| ||   |||||| |||||||  |||||| ||||||||||||| |||||||||||||    
T  49264599 ccatctctaatcctccccacctccctccaccaataagaacaactccggcccccaacctccaacctccc 49264532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 264
Target Start/End: Complemental strand, 47622713 - 47622615
Alignment:
Q  166 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacac 264  Q
    ||||||||||||| |||  | |||  |||||||  |||||| ||||||||||| ||||||||| |  |||||| || ||||||| || |||||||||||    
T  47622713 cccatctctaatcctcactatctctctccaccaagaagaacaactccggcccctatcctccaaacctccatccaccacaccatacctagccaccaacac 47622615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 52691996 - 52692082
Alignment:
Q  187 ctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 273  Q
    |||| |||||||  ||||| ||||||| ||| |  || ||||||||||| ||||||||||||| | |||||||||||| | ||||||    
T  52691996 ctccctccaccaagaagaatcactccgaccctctaccaccaacctcccagcctcctcaccataccgcgccaccaacaccctatacca 52692082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 20796173 - 20796238
Alignment:
Q  167 ccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctc 232  Q
    |||||||||||| ||   |||||| |||||||  |||||| ||||||||||||| |||||||||||    
T  20796173 ccatctctaatcctccccacctccctccaccaataagaacaactccggcccccaacctccaacctc 20796238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 52250725 - 52250653
Alignment:
Q  201 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 273  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  52250725 aagaaccactccggcccccaacctccaacctcccatcctcctcaccatatctcgccaccaacaccctatacca 52250653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 173 - 320
Target Start/End: Original strand, 31675442 - 31675589
Alignment:
Q  173 ctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacc 272  Q
    ||||||||||  || |||||||||||  | |||  ||||||||||||  |||||||||||||  ||||||||||||||||| |||||| ||| | |||||    
T  31675442 ctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcaccaccagcaccctatacc 31675541  T
Q  273 aaataccacctctatcaactaacatacgccaacaccacttacccaaca 320  Q
    ||| |||||||||||| || ||||| ||||||||||| ||||| ||||    
T  31675542 aaaaaccacctctatccaccaacattcgccaacaccatttacctaaca 31675589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 208 - 320
Target Start/End: Complemental strand, 31920945 - 31920833
Alignment:
Q  208 actccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgccaacac 307  Q
    ||||||||||||  |||||||||||||  ||||||||||||||||| |||||| ||| | |||||||| |||||||||||| || ||||| |||||||||    
T  31920945 actccggccccctacctccaacctccctgcctcctcaccatatctcaccaccagcaccctataccaaaaaccacctctatccaccaacattcgccaacac 31920846  T
Q  308 cacttacccaaca 320  Q
    || ||||| ||||    
T  31920845 catttacctaaca 31920833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 185 - 320
Target Start/End: Original strand, 44888427 - 44888562
Alignment:
Q  185 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctc 284  Q
    ||||||||||||||| ||||| ||||||| ||| || || ||||||||||||||||||||||||| | |||||||||||| | |||||| |||| |||      
T  44888427 acctccttccaccacgaagaaacactccgaccctcaaccaccaacctcccatcctcctcaccataacgcgccaccaacaccctataccacatactaccct 44888526  T
Q  285 tatcaactaacatacgccaacaccacttacccaaca 320  Q
    |||||||||| |  | ||||||||| ||||| ||||    
T  44888527 tatcaactaataacctccaacaccatttacctaaca 44888562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 185 - 314
Target Start/End: Original strand, 19875766 - 19875895
Alignment:
Q  185 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctc 284  Q
    ||||||||||||||  | ||  |||||||||||||| ||||||||||||   |||||||||||||||||||||||||||| | ||||||||  |||||||    
T  19875766 acctccttccaccaagatgatacactccggcccccaacctccaacctccttgcctcctcaccatatctcgccaccaacaccctataccaaaacccacctc 19875865  T
Q  285 tatcaactaacatacgccaacaccacttac 314  Q
    |||| |  ||||  ||||||||||| ||||    
T  19875866 tatctatcaacaaccgccaacaccatttac 19875895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 48930257 - 48930325
Alignment:
Q  193 ccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaa 261  Q
    |||||||  ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48930257 ccaccacgcagaaccactccagcccccaacctccaacctcccatcctcctcaccatatctcgccaccaa 48930325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 167 - 309
Target Start/End: Original strand, 55367115 - 55367257
Alignment:
Q  167 ccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactc 266  Q
    ||||||||||||||| | | |||| ||||||| || ||| |||||||||||||  ||||||||||| |  ||||||||||||||||||| | ||| ||      
T  55367115 ccatctctaatcttcgttatctccatccaccaaaaggaatcactccggccccctacctccaacctctctgcctcctcaccatatctcgctaacaaaacct 55367214  T
Q  267 gataccaaataccacctctatcaactaacatacgccaacacca 309  Q
     |||||| |  |||||||||||||||||||| | |||||||||    
T  55367215 tataccacaacccacctctatcaactaacatcctccaacacca 55367257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 201 - 309
Target Start/End: Original strand, 6825361 - 6825469
Alignment:
Q  201 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacg 300  Q
    ||||||| |||||||||||| || ||||||||||||||||||||||||| | |||||||||||| | |||||| | || ||  || ||||| |||| |||    
T  6825361 aagaacctctccggcccccaaccgccaacctcccatcctcctcaccataccgcgccaccaacaccctataccataaactactcctctcaaccaacaaacg 6825460  T
Q  301 ccaacacca 309  Q
    |||||||||    
T  6825461 ccaacacca 6825469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 2364776 - 2364879
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| ||| || |||| |||||||| |||||| ||||||||||||||||||||| |  ||||||||| ||||||| || ||||| |    
T  2364776 cctatcccatctctaatcctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccacta 2364875  T
Q  261 acac 264  Q
    ||||    
T  2364876 acac 2364879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 309
Target Start/End: Complemental strand, 25024484 - 25024337
Alignment:
Q  162 ctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaa 261  Q
    |||| |||||||||||| |   ||||||  |||||||  |||||| |||||| |||||| || ||||||||||  |||||||||||||||| ||  ||||    
T  25024484 ctactccatctctaatcctatcaacctctctccaccaataagaacaactccgacccccaaccgccaacctccctgcctcctcaccatatctagcttccaa 25024385  T
Q  262 cactcgataccaaataccacctctatcaactaacatacgccaacacca 309  Q
    ||| | |||||||| |||| ||||||| |||||||| | |||||||||    
T  25024384 caccctataccaaaaaccatctctatccactaacatcctccaacacca 25024337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 8130472 - 8130526
Alignment:
Q  183 taacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatc 237  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  8130472 taacctccttccaccaaaaagaaccactccggcccccaacctccaacctcccatc 8130526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 315
Target Start/End: Original strand, 18381584 - 18381711
Alignment:
Q  187 ctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctcta 286  Q
    |||| ||||||| | |||| ||||||| |||| | | |||||||| |||||||| |||||||||||||||||||| || | |||||| |  || ||||||    
T  18381584 ctccctccaccaaatagaaacactccgcccccta-catccaaccttccatcctcgtcaccatatctcgccaccaaaacccaataccataaccctcctcta 18381682  T
Q  287 tcaactaacatacgccaacaccacttacc 315  Q
    ||||| ||||| | |||||||||||||||    
T  18381683 tcaaccaacattctccaacaccacttacc 18381711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 264
Target Start/End: Original strand, 31547894 - 31547974
Alignment:
Q  185 acctccttccaccacaaagaaccactccggccccc-atcctccaacctcccatcctcctcaccatatctcgccaccaacac 264  Q
    ||||||||||||||| ||||| ||||||||||||| | || ||||||||||||||||||||||||| | ||| ||||||||    
T  31547894 acctccttccaccacgaagaaacactccggccccccaaccaccaacctcccatcctcctcaccataacgcgctaccaacac 31547974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 10323212 - 10323109
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| ||| || |||| |||||||| |||||  ||||||||||||||||||||| |  ||||||||| ||||||| || ||||| |    
T  10323212 cctatcccatctctaatcctcacaatctccctccaccacgaagaataactccggcccccatcctccaaaccgccatcctccacaccatacctagccacta 10323113  T
Q  261 acac 264  Q
    ||||    
T  10323112 acac 10323109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 161 - 320
Target Start/End: Complemental strand, 12341896 - 12341737
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| | | || |||| |||||||| |||| | ||||||||||||||||||||| |  ||||||||| | ||||| || |||| ||    
T  12341896 cctatcccatctctaatcctaacaatctccctccaccacgaagagcaactccggcccccatcctccaaaccaccatcctccacgccatacctagccaaca 12341797  T
Q  261 acactcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 320  Q
    |||| | |  ||| | ||| || |||||||||||||  ||||||||||| || |||||||    
T  12341796 acaccctactccacaaacctcccctatcaactaacagccgccaacaccatttccccaaca 12341737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 19919870 - 19919767
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| ||| || |||| |||||||| |||||| ||||||||||||||||||||| |   |||||||| ||||||| || ||||| |    
T  19919870 cctatcccatctctaatcctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgtcatcctccacaccatacctagccacta 19919771  T
Q  261 acac 264  Q
    ||||    
T  19919770 acac 19919767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 312
Target Start/End: Original strand, 9510327 - 9510402
Alignment:
Q  237 cctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgccaacaccactt 312  Q
    ||||||||||||| || ||  ||||||| |||||||||| ||||||||||| ||||||||| | ||||||||||||    
T  9510327 cctcctcaccataccttgcagccaacacccgataccaaaaaccacctctattaactaacatcctccaacaccactt 9510402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 312
Target Start/End: Original strand, 9518302 - 9518377
Alignment:
Q  237 cctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgccaacaccactt 312  Q
    ||||||||||||| || ||  ||||||| |||||||||| ||||||||||| ||||||||| | ||||||||||||    
T  9518302 cctcctcaccataccttgcagccaacacccgataccaaaaaccacctctattaactaacatcctccaacaccactt 9518377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 53941802 - 53941905
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    ||||| ||||| |||||||||   | |||| ||||| | |||||| |||||||||||||  || ||||||||||| ||||||||||||| | ||||||||    
T  53941802 cctactccatccctaatcttcgctatctccctccactaaaaagaatcactccggccccctaccaccaacctcccagcctcctcaccataccgcgccacca 53941901  T
Q  261 acac 264  Q
    ||||    
T  53941902 acac 53941905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 297
Target Start/End: Complemental strand, 5342835 - 5342717
Alignment:
Q  179 ttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaatac 278  Q
    |||| ||||||| |||||||| |||||||||||||||||| ||||||||||||| |  |||||| | |||| |  ||||| || || | |||||| | ||    
T  5342835 ttcacaacctccctccaccacgaagaaccactccggcccctatcctccaacctctctacctccttaacataacgagccacaaatacgctataccataaac 5342736  T
Q  279 cacctctatcaactaacat 297  Q
    | | |||||||||||||||    
T  5342735 ctcttctatcaactaacat 5342717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 309
Target Start/End: Original strand, 19891181 - 19891324
Alignment:
Q  166 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacact 265  Q
    ||||||||||||| | |  | |||| |||||||| |||||| ||| ||||||||||||||||| |  |||||  || ||||||| || |||||||||||     
T  19891181 cccatctctaatcctgactatctccctccaccacgaagaacaacttcggcccccatcctccaaaccaccatctgccacaccatacctagccaccaacacc 19891280  T
Q  266 cgataccaaataccacctctatcaactaacatacgccaacacca 309  Q
    | |  ||| | |||| | |||||||||||||  |||||||||||    
T  19891281 ctacgccacaaaccaaccctatcaactaacaatcgccaacacca 19891324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 296
Target Start/End: Complemental strand, 22734352 - 22734229
Alignment:
Q  173 ctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacc 272  Q
    ||||||||||  | ||| ||||||||||  |||| |||||||||||||||||||||||| |||| | || |||||||||  | || |||||| | ||||     
T  22734352 ctaatcttcactatctctttccaccacatggaacaactccggcccccatcctccaacctaccatgcaccgcaccatatcgtgtcaacaacaccctataca 22734253  T
Q  273 aaataccacctctatcaactaaca 296  Q
    | | || ||||||||| |||||||    
T  22734252 acagactacctctatcgactaaca 22734229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 34332456 - 34332353
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| |||  | |||| |||||||| |||||| ||||| ||||||||||||||| |  |||||| || ||||||| || ||||| |    
T  34332456 cctatcccatctctaatcctcactatctccctccaccacgaagaacaactcccgcccccatcctccaaacctccatccgccacaccatacctagccacta 34332357  T
Q  261 acac 264  Q
    ||||    
T  34332356 acac 34332353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 46190032 - 46190091
Alignment:
Q  202 agaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaa 261  Q
    |||| |||||||||||||| ||||||||| | || ||||||||||||| |||||||||||    
T  46190032 agaaacactccggcccccaacctccaaccgctcagcctcctcaccatacctcgccaccaa 46190091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 309
Target Start/End: Complemental strand, 48569680 - 48569532
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| | |  | |||| || ||||| ||||||  || ||||||||||||||||| |  |||||| || ||||||| || |||||||    
T  48569680 cctatcccatctctaatcctgactatctccctctaccacgaagaacagcttcggcccccatcctccaaaccaccatccgccacaccatacctagccacca 48569581  T
Q  261 acactcgataccaaataccacctctatcaactaacatacgccaacacca 309  Q
    |||| | |  ||| |  ||| |||||||||||||||  |||||||||||    
T  48569580 acaccctacgccacaacccatctctatcaactaacaaccgccaacacca 48569532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 14307753 - 14307812
Alignment:
Q  207 cactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactc 266  Q
    ||||||||||||||  |||||| |||||  |||||||||||||||||||| |||| ||||    
T  14307753 cactccggcccccaaactccaatctccctgcctcctcaccatatctcgccgccaatactc 14307812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 16179446 - 16179513
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaa 228  Q
    |||| ||||||||||||| ||| || ||||  ||||||  |||||| |||||||||||||||||||||    
T  16179446 cctatcccatctctaatcctcacaatctcccgccaccaagaagaacaactccggcccccatcctccaa 16179513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 21740140 - 21740090
Alignment:
Q  185 acctccttccaccacaaagaaccactccggcccccatcctccaacctccca 235  Q
    |||||| |||||||  |||||| ||||||||||||| ||||||||||||||    
T  21740140 acctccctccaccaagaagaacaactccggcccccaacctccaacctccca 21740090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 36709441 - 36709483
Alignment:
Q  193 ccaccacaaagaaccactccggcccccatcctccaacctccca 235  Q
    ||||||||||||| |||||||||||||  ||||||||||||||    
T  36709441 ccaccacaaagaaacactccggccccccacctccaacctccca 36709483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 45684707 - 45684749
Alignment:
Q  193 ccaccacaaagaaccactccggcccccatcctccaacctccca 235  Q
    ||||||||||||| |||||||||||||  ||||||||||||||    
T  45684707 ccaccacaaagaaacactccggccccccacctccaacctccca 45684749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 320
Target Start/End: Complemental strand, 40513319 - 40513206
Alignment:
Q  207 cactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgccaaca 306  Q
    |||||| ||||||| ||||||||| |||| ||  ||||||||| |  || ||||  || | |||||| | |||||||||||| || ||||| ||||||||    
T  40513319 cactcctgcccccaacctccaaccgcccagccgtctcaccataccgagctaccaggaccctataccataaaccacctctatccaccaacatccgccaaca 40513220  T
Q  307 ccacttacccaaca 320  Q
    ||| ||||| ||||    
T  40513219 ccatttacctaaca 40513206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 14864082 - 14864018
Alignment:
Q  185 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccata 249  Q
    |||||| |||||||  |||||| ||||||||||||  |||||||||||||| || |||| |||||    
T  14864082 acctccctccaccaagaagaacaactccggccccccacctccaacctcccacccacctcgccata 14864018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 42675047 - 42675004
Alignment:
Q  193 ccaccacaaagaaccactccggcccccatcctccaacctcccatc 237  Q
    |||||||||||||  ||||||||||||| ||||||||||||||||    
T  42675047 ccaccacaaagaaatactccggccccca-cctccaacctcccatc 42675004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 164 - 286
Target Start/End: Complemental strand, 42039343 - 42039221
Alignment:
Q  164 accccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaaca 263  Q
    |||||||| ||||||||||| | |||| |||||||  || || |||||||||||||||||||||||| |||| || ||||||||||| ||||||||||||    
T  42039343 accccatccctaatcttcattaactccctccaccaagaaaaagcactccggcccccatcctccaaccgcccaaccacctcaccatatttcgccaccaaca 42039244  T
Q  264 ctcgataccaaataccacctcta 286  Q
    | | ||||||||  |||||||||    
T  42039243 ccctataccaaaacccacctcta 42039221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 320
Target Start/End: Original strand, 476724 - 476871
Alignment:
Q  173 ctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacc 272  Q
    ||||||||||  || |||||||||||  | |||  ||||||||||||  |||||||||||||  ||||||||||||||||||| |||| ||| | |||||    
T  476724 ctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctatacc 476823  T
Q  273 aaataccacctctatcaactaacatacgccaacaccacttacccaaca 320  Q
    ||| |||| ||||||| || ||||| ||||||||||| ||||| ||||    
T  476824 aaaaaccatctctatctaccaacattcgccaacaccatttacctaaca 476871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 320
Target Start/End: Original strand, 42259782 - 42259938
Alignment:
Q  164 accccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaaca 263  Q
    |||||||| ||||||||||  |||||| |||||||  ||||| ||||||||| |||| ||||||| |||||| || |||||| ||||||| |||| ||||    
T  42259782 accccatccctaatcttcactacctccctccaccaagaagaagcactccggctcccaacctccaaactcccagccacctcacgatatctctccacaaaca 42259881  T
Q  264 ctcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 320  Q
    |   ||||||||  ||||||||||| || ||||| || |||||||| ||||| ||||    
T  42259882 ccttataccaaaacccacctctatccaccaacatccgtcaacaccatttacctaaca 42259938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 35983432 - 35983329
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| ||| || |||| |||||||| |||||| ||||||||||||||||||||| |  |||||| |||||||||| || |||||||    
T  35983432 cctatcccatctctaatcctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaacctccatccgcctcaccatacctagccacca 35983333  T
Q  261 acac 264  Q
    ||||    
T  35983332 acac 35983329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 42514219 - 42514322
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| ||| || |||| |||||||| |||||| ||||||||||||||||||||| || ||||||||| ||||||| || ||||| |    
T  42514219 cctatcccatctctaatcctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaactgccatcctccacaccatacctagccacta 42514318  T
Q  261 acac 264  Q
    ||||    
T  42514319 acac 42514322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 27325286 - 27325351
Alignment:
Q  184 aacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccata 249  Q
    ||||||| |||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||    
T  27325286 aacctccctccaccacaaagaacccctccggtccccatcctccaacctcccatactcctcaccata 27325351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 36256255 - 36256354
Alignment:
Q  142 aaaccaaccaacaccgccccctacc---ccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcc 238  Q
    |||||||||||||||||||||  ||   || ||||||||| |   |||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  36256255 aaaccaaccaacaccgcccccaccctccccttctctaatcctaccaacctctttccaccaaaaagaaccactccggcccccatcctccaacctcccatcc 36256354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 41590635 - 41590707
Alignment:
Q  201 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 273  Q
    ||||||| |||||||||||| || ||||||||||||||||||||||||| |||||||||||||| | ||||||    
T  41590635 aagaacctctccggcccccaaccgccaacctcccatcctcctcaccatacctcgccaccaacaccctatacca 41590707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 320
Target Start/End: Complemental strand, 8299823 - 8299664
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||| ||||| ||| || |||| ||||||||||||||| ||||||||||||||||||||| |  ||||||||| | ||||| || |||| ||    
T  8299823 cctatcccatctttaatcctcacaatctccctccaccacaaagaacaactccggcccccatcctccaaaccaccatcctccacgccatacctagccaaca 8299724  T
Q  261 acactcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 320  Q
    |||| | |  ||| | ||| || |||||||||||||  | ||||||||| || |||||||    
T  8299723 acaccctactccacaaacctcccctatcaactaacagcctccaacaccatttccccaaca 8299664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 309
Target Start/End: Original strand, 380427 - 380548
Alignment:
Q  188 tccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctat 287  Q
    |||||| ||||  |||||||||||||||||||| |||||||||||||  ||||||||||||| | |||  ||| ||| | |||||| | |||| ||||||    
T  380427 tccttctaccaagaagaaccactccggcccccaacctccaacctccctgcctcctcaccataccgcgcttccagcaccctataccagaaaccatctctat 380526  T
Q  288 caactaacatacgccaacacca 309  Q
    | || ||||| |||||||||||    
T  380527 ccaccaacatccgccaacacca 380548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 4297910 - 4297838
Alignment:
Q  201 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 273  Q
    ||||||| |||||| ||||| || ||||||||||||||||||||||||| |||||||||||||| | ||||||    
T  4297910 aagaacctctccgggccccaaccgccaacctcccatcctcctcaccatacctcgccaccaacaccctatacca 4297838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 25857065 - 25856999
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctcca 227  Q
    |||| ||||||||||||| ||| || |||| ||||||||||||||| ||||||||||||||||||||    
T  25857065 cctatcccatctctaatcctcacaatctccctccaccacaaagaacaactccggcccccatcctcca 25856999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 258
Target Start/End: Complemental strand, 30731955 - 30731858
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccac 258  Q
    |||| ||||||||||||| ||| || |||| |||||||  |||||| ||||||||||||||||||||| |  ||||||||| ||||||| || |||||    
T  30731955 cctatcccatctctaatcctcacaatctccctccaccatgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccac 30731858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 12825698 - 12825786
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccata 249  Q
    |||| ||||||||||||| ||| || |||| |||||||| |||||| |||| | |||||||||||||| || ||||||||| |||||||    
T  12825698 cctatcccatctctaatcctcacaatctccctccaccacgaagaacaactctgacccccatcctccaaactgccatcctccacaccata 12825786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 26263048 - 26262984
Alignment:
Q  185 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccata 249  Q
    |||||| ||||||| ||||| ||||||||||||||| || ||||||| |||||||||||||||||    
T  26263048 acctccctccaccaaaaagacccactccggcccccacccaccaaccttccatcctcctcaccata 26262984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 312
Target Start/End: Complemental strand, 22094859 - 22094740
Alignment:
Q  193 ccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaact 292  Q
    ||||||| |||||| ||| ||||||||||||||||||||||||    |||| ||||| |  || || || |||| |||||||| |||||| ||||| |||    
T  22094859 ccaccacgaagaacaacttcggcccccatcctccaacctcccacaaacctcgccataacgagcgactaaaactctataccaaaaaccacccctatccact 22094760  T
Q  293 aacatacgccaacaccactt 312  Q
    ||||| | ||||||||||||    
T  22094759 aacatcctccaacaccactt 22094740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 27116814 - 27116711
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| |||  | |||| |||||||| |||||| ||||||||||||||||||||| |  ||||||||| | ||||| || ||||| |    
T  27116814 cctatcccatctctaatcctcacgatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacgccatacctagccacta 27116715  T
Q  261 acac 264  Q
    ||||    
T  27116714 acac 27116711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 28535316 - 28535213
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| |||  | |||| |||||||  |||||| ||||||||||||||||||||| |  |||||| || ||||||| || |||||||    
T  28535316 cctatcccatctctaatcctcactatctccctccaccatgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccacca 28535217  T
Q  261 acac 264  Q
    ||||    
T  28535216 acac 28535213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 31642010 - 31642113
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| |||  | ||||  ||||||  |||||| ||||||||||||||||||||| |  |||||| || |||||||||| |||||||    
T  31642010 cctatcccatctctaatcctcactatctcccgccaccatgaagaacaactccggcccccatcctccaaacctccatccgccacaccatatctagccacca 31642109  T
Q  261 acac 264  Q
    ||||    
T  31642110 acac 31642113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 312
Target Start/End: Complemental strand, 20208356 - 20208210
Alignment:
Q  165 ccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacac 264  Q
    ||||||||||||||| |   |||||| ||||||| || |||| ||||||||||||| |||||||||||||| |  | || ||||| |  || || || ||    
T  20208356 ccccatctctaatctaccccacctccctccaccaaaacgaacaactccggcccccaacctccaacctcccacctacttcgccata-cgggcgactaagac 20208258  T
Q  265 tcgataccaaataccacctctatcaactaacatacgccaacaccactt 312  Q
    ||||||||||| |||||  ||||| |||| ||| | ||||||||||||    
T  20208257 tcgataccaaaaaccactcctatctactagcatcctccaacaccactt 20208210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 309
Target Start/End: Original strand, 27795988 - 27796131
Alignment:
Q  166 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacact 265  Q
    ||||||||||||||| |    |||| |||||||| |||||| |||| |||||||||||||||| |  |||||| || ||||||| || |||||||||||     
T  27795988 cccatctctaatcttgacttactccctccaccacgaagaacaactctggcccccatcctccaaaccaccatccgccacaccatacctagccaccaacacc 27796087  T
Q  266 cgataccaaataccacctctatcaactaacatacgccaacacca 309  Q
    | |  ||| |  ||  |||||||||||||||  |||||||||||    
T  27796088 ctacgccataacccctctctatcaactaacaaccgccaacacca 27796131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 22176440 - 22176376
Alignment:
Q  188 tccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatct 252  Q
    |||||||||||  ||||  |||||||||||||| || ||||||||||  ||||||||||||||||    
T  22176440 tccttccaccaagaagagacactccggcccccaaccgccaacctccctgcctcctcaccatatct 22176376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 42928661 - 42928733
Alignment:
Q  192 tccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacac 264  Q
    |||||||| |||||| ||||||||||||||||||||| |  |||||| || || |||| || |||||||||||    
T  42928661 tccaccacgaagaacaactccggcccccatcctccaaacctccatccgccacatcatacctagccaccaacac 42928733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 23238882 - 23238985
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| |||  | |||| |||||||| | |||| ||||||||||||| ||||||| |  |||||| || ||||||| || ||||| |    
T  23238882 cctatcccatctctaatcctcactatctccctccaccacgacgaacaactccggcccccaacctccaaacctccatccgccacaccatacctagccacta 23238981  T
Q  261 acac 264  Q
    ||||    
T  23238982 acac 23238985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 320
Target Start/End: Original strand, 10780737 - 10780859
Alignment:
Q  198 acaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacat 297  Q
    ||||||| | ||||||||||||||||||||| |  |||||| || | ||||| || |||| |||||| | |  ||| | ||| || |||||||||||||     
T  10780737 acaaagagcaactccggcccccatcctccaaaccaccatccgccactccatacctagccaacaacaccctactccacaaacctcccctatcaactaacag 10780836  T
Q  298 acgccaacaccacttacccaaca 320  Q
     ||||||||||| || |||||||    
T  10780837 ccgccaacaccatttccccaaca 10780859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 320
Target Start/End: Original strand, 18896109 - 18896207
Alignment:
Q  222 cctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 320  Q
    ||||||||||||||||| |||||| ||| |||||  ||||||  | |||||| |  || ||||||||||| ||||  | ||||||||||||||| ||||    
T  18896109 cctccaacctcccatccacctcacgatacctcgctgccaacatcctataccacaaccctcctctatcaaccaacaatctccaacaccacttacctaaca 18896207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 27165591 - 27165525
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctcca 227  Q
    |||| ||||||||||||| |||| | |||| |||||||  |||||| ||| ||||||||||||||||    
T  27165591 cctatcccatctctaatcctcattatctccctccaccaagaagaacaacttcggcccccatcctcca 27165525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 29572465 - 29572377
Alignment:
Q  209 ctccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacat 297  Q
    |||||||||||| ||||||||||| |  ||||||||||||| || ||  ||||||| |  |||||||  |||| ||| |||||||||||    
T  29572465 ctccggcccccaacctccaacctctctgcctcctcaccatacctagcagccaacaccctttaccaaaacccacatctgtcaactaacat 29572377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 29573842 - 29573754
Alignment:
Q  209 ctccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacat 297  Q
    |||||||||||| ||||||||||| |  ||||||||||||| || ||  ||||||| |  |||||||  |||| ||| |||||||||||    
T  29573842 ctccggcccccaacctccaacctctctgcctcctcaccatacctagcagccaacaccctttaccaaaacccacatctgtcaactaacat 29573754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 29575219 - 29575131
Alignment:
Q  209 ctccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacat 297  Q
    |||||||||||| ||||||||||| |  ||||||||||||| || ||  ||||||| |  |||||||  |||| ||| |||||||||||    
T  29575219 ctccggcccccaacctccaacctctctgcctcctcaccatacctagcagccaacaccctttaccaaaacccacatctgtcaactaacat 29575131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 29576596 - 29576508
Alignment:
Q  209 ctccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacat 297  Q
    |||||||||||| ||||||||||| |  ||||||||||||| || ||  ||||||| |  |||||||  |||| ||| |||||||||||    
T  29576596 ctccggcccccaacctccaacctctctgcctcctcaccatacctagcagccaacaccctttaccaaaacccacatctgtcaactaacat 29576508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 29577973 - 29577885
Alignment:
Q  209 ctccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacat 297  Q
    |||||||||||| ||||||||||| |  ||||||||||||| || ||  ||||||| |  |||||||  |||| ||| |||||||||||    
T  29577973 ctccggcccccaacctccaacctctctgcctcctcaccatacctagcagccaacaccctttaccaaaacccacatctgtcaactaacat 29577885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 29579350 - 29579262
Alignment:
Q  209 ctccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacat 297  Q
    |||||||||||| ||||||||||| |  ||||||||||||| || ||  ||||||| |  |||||||  |||| ||| |||||||||||    
T  29579350 ctccggcccccaacctccaacctctctgcctcctcaccatacctagcagccaacaccctttaccaaaacccacatctgtcaactaacat 29579262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 312
Target Start/End: Original strand, 35637673 - 35637785
Alignment:
Q  200 aaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatac 299  Q
    |||||| |||||||| ||||| |||||||| || |  ||||||| ||||| ||||| ||||||||    ||||| | ||| ||||||||||| ||||  |    
T  35637673 aaagaaacactccggtccccaacctccaacttcactgcctcctcgccatacctcgcaaccaacaccttgtaccataaacctcctctatcaaccaacaacc 35637772  T
Q  300 gccaacaccactt 312  Q
     ||||||||||||    
T  35637773 tccaacaccactt 35637785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 161 - 278
Target Start/End: Complemental strand, 86842 - 86725
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| |||||| ||||| |||| |||||||||||||||   | |||||||| | |||||||||||||||||||||  ||||||||||||||| || ||||    
T  86842 cctatcccatccctaattttcacaacctccttccaccaattacaaccactctgacccccatcctccaacctcccacactcctcaccatatctagcaacca 86743  T
Q  261 acactcgataccaaatac 278  Q
    ||||||||||||| ||||    
T  86742 acactcgataccacatac 86725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 161 - 265
Target Start/End: Original strand, 42649718 - 42649822
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||  ||||||||| || ||| |||||||||  ||||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||    
T  42649718 cctatcccatccataatcttcacaatctcattccaccacgtagaaccactccggcccccatctttcaacctcccgtcctcctcaccatatctagccacca 42649817  T
Q  261 acact 265  Q
    |||||    
T  42649818 acact 42649822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 309
Target Start/End: Original strand, 36492920 - 36493028
Alignment:
Q  201 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacg 300  Q
    ||||||| |||||||||||| || ||||||||||||||||||||||||| |||||||||||||| | |||||| | || ||  || ||||| |||| |||    
T  36492920 aagaacctctccggcccccaaccgccaacctcccatcctcctcaccatacctcgccaccaacaccctataccataaactactcctctcaaccaacaaacg 36493019  T
Q  301 ccaacacca 309  Q
    |||||||||    
T  36493020 ccaacacca 36493028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 161 - 320
Target Start/End: Original strand, 20824798 - 20824957
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| ||| || |||| ||||||||||||||| ||||||||||||||||||||| |  ||||||||| | ||||| || |||| ||    
T  20824798 cctatcccatctctaatcctcacaatctccctccaccacaaagaacaactccggcccccatcctccaaaccaccatcctccacgccatacctagccaaca 20824897  T
Q  261 acactcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 320  Q
    |||| | |  ||| | ||| || |||||||||||||  | ||||||||| || |||||||    
T  20824898 acaccctactccacaaacctcccctatcaactaacagcctccaacaccatttccccaaca 20824957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 4310460 - 4310406
Alignment:
Q  184 aacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcc 238  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4310460 aacctccttccaccaaaaagaaccactccggcccccatcctccaacctcccatcc 4310406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 309
Target Start/End: Original strand, 36025066 - 36025168
Alignment:
Q  207 cactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgccaaca 306  Q
    |||||||| ||||| ||||||||| |||| ||||||||||||||||||||||||| |||| |||||| |  || |||||||| || ||||| ||||||||    
T  36025066 cactccggtccccaacctccaaccgcccagcctcctcaccatatctcgccaccaaaactctataccataaccctcctctatccaccaacatccgccaaca 36025165  T
Q  307 cca 309  Q
    |||    
T  36025166 cca 36025168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 309
Target Start/End: Complemental strand, 29721546 - 29721403
Alignment:
Q  166 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacact 265  Q
    |||||| |||||||||   | |||| |||||||  ||||  |||||||||||||  ||||||||||||||  |||||||||||||||||||||||| ||     
T  29721546 cccatccctaatcttcgctatctccctccaccaataagagacactccggccccctacctccaacctcccaggctcctcaccatatctcgccaccaaaacc 29721447  T
Q  266 cgataccaaataccacctctatcaactaacatacgccaacacca 309  Q
    | |||||| |  ||||||  |||||||||||| | |||||||||    
T  29721446 ctataccacaacccaccttgatcaactaacatcctccaacacca 29721403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 166 - 264
Target Start/End: Original strand, 7924890 - 7924988
Alignment:
Q  166 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacac 264  Q
    ||||||||||||| ||| || |||| |||||||| |||||| ||||||||||||||||||||| |  ||||||||| ||||||| || ||||| |||||    
T  7924890 cccatctctaatcctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccactaacac 7924988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 202 - 312
Target Start/End: Complemental strand, 37165721 - 37165611
Alignment:
Q  202 agaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgc 301  Q
    |||| |||||||||||||| ||||||||| |||||||||||| ||||||||||||||||  || | |||||| |  || |||||||| |||||||| | |    
T  37165721 agaaacactccggcccccaacctccaaccgcccatcctcctcgccatatctcgccaccagtaccctataccacaagcctcctctatccactaacatcctc 37165622  T
Q  302 caacaccactt 312  Q
    ||||| |||||    
T  37165621 caacatcactt 37165611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 225 - 309
Target Start/End: Original strand, 12332411 - 12332495
Alignment:
Q  225 ccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgccaacacca 309  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||| || ||  || || ||||| | ||||||||||||    
T  12332411 ccaacctcccatcctcctcaccatatctcgccaccaacaccctataccaaagactacacctctccactaataaacgccaacacca 12332495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 320
Target Start/End: Original strand, 18187668 - 18187804
Alignment:
Q  184 aacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacct 283  Q
    |||||||||||||||||||||||||||||||||| || |  |||||| |||  |||||||||||||||   | |||| | | | |||||| | |||||||    
T  18187668 aacctccttccaccacaaagaaccactccggccctcaactgccaaccgccctacctcctcaccatatcaatcaaccagctccctataccacaaaccacct 18187767  T
Q  284 ctatcaactaacatacgccaacaccacttacccaaca 320  Q
    ||||| |||||||  | ||||||||| ||||| ||||    
T  18187768 ctatctactaacaatctccaacaccatttacctaaca 18187804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 273
Target Start/End: Original strand, 25193587 - 25193699
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| |||||| |||||||||   | |||| |||||||  ||||| |||||||||||||  |||||||||||||| ||||||||||||| | | ||||||    
T  25193587 cctatcccatccctaatcttcgctatctccctccaccaataagaatcactccggccccctacctccaacctcccagcctcctcaccataccgcaccacca 25193686  T
Q  261 acactcgatacca 273  Q
    |||| ||||||||    
T  25193687 acacccgatacca 25193699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 172680 - 172577
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| |||  | |||| |||||||| |||||| ||||||||||||||||||||| |  ||||||||| ||||||| || ||||| |    
T  172680 cctatcccatctctaatcctcacgatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccacta 172581  T
Q  261 acac 264  Q
    ||||    
T  172580 acac 172577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 8300302 - 8300405
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| |||  | |||| |||||||| |||||| ||||||||||||||||||||| |  ||||||||| ||||||| || ||||| |    
T  8300302 cctatcccatctctaatcctcacgatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccacta 8300401  T
Q  261 acac 264  Q
    ||||    
T  8300402 acac 8300405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 309
Target Start/End: Complemental strand, 13879128 - 13878980
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||||| |  | |||| |||||||| |||||| |||| |||||||||||||||| |  |||||| || ||||||| || |||||||    
T  13879128 cctatcccatctctaatcttgactatctccctccaccacgaagaacaactctggcccccatcctccaaaccaccatccgccacaccatacctagccacca 13879029  T
Q  261 acactcgataccaaataccacctctatcaactaacatacgccaacacca 309  Q
    |||| | |  ||| |  ||  |||||||||||||||  |||||||||||    
T  13879028 acaccctacgccataacccctctctatcaactaacaaccgccaacacca 13878980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 9923100 - 9923203
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| |||  | |||| |||||||  |||||| ||||||||||||||||||||| |  |||||| || ||||||| || |||||||    
T  9923100 cctatcccatctctaatcctcactatctccctccaccatgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccacca 9923199  T
Q  261 acac 264  Q
    ||||    
T  9923200 acac 9923203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 320
Target Start/End: Original strand, 17659354 - 17659489
Alignment:
Q  185 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctc 284  Q
    |||||| |||||||  |||||| ||||||||||||| |||||||||||||| |  | || ||||| |  || || || |||||||||||||  ||||  |    
T  17659354 acctccctccaccaagaagaacaactccggcccccaacctccaacctcccacctacttcgccataacgggcgactaagactcgataccaaaagccactcc 17659453  T
Q  285 tatcaactaacatacgccaacaccacttacccaaca 320  Q
    ||||||||| ||| | ||||||||||||||| ||||    
T  17659454 tatcaactagcatcctccaacaccacttacctaaca 17659489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 312
Target Start/End: Original strand, 12341107 - 12341217
Alignment:
Q  202 agaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgc 301  Q
    |||| ||||||||| |||| ||||||||| |||| ||||||||||||| ||||||||||  || | | |||| |  || |||||||| |||||||| | |    
T  12341107 agaaacactccggctcccaacctccaaccgcccagcctcctcaccatacctcgccaccagtaccctaaaccacaaccctcctctatccactaacatcctc 12341206  T
Q  302 caacaccactt 312  Q
    |||||||||||    
T  12341207 caacaccactt 12341217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 38046883 - 38046945
Alignment:
Q  187 ctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccata 249  Q
    |||| |||| ||| |||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  38046883 ctccctccatcacgaagaacaacttcggcccccatcctccaacctcccatcctccacaccata 38046945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 264
Target Start/End: Complemental strand, 41665004 - 41664906
Alignment:
Q  166 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacac 264  Q
    ||||||||||||| |||  | |||| |||||||| |||||| ||||||||||||||||||||| |  |||||| || ||||||| || ||||| |||||    
T  41665004 cccatctctaatcctcactatctccatccaccacgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccactaacac 41664906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 12134850 - 12134898
Alignment:
Q  185 acctccttccaccacaaagaaccactccggcccccatcctccaacctcc 233  Q
    ||||||| |||||| ||||||||||||||||||||| ||||||||||||    
T  12134850 acctcctgccaccataaagaaccactccggcccccaacctccaacctcc 12134898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 28992846 - 28992782
Alignment:
Q  185 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccata 249  Q
    |||||| |||||||| ||||| ||||| |||||||| ||| ||||||| ||||||||||||||||    
T  28992846 acctccctccaccacgaagaaacactctggcccccaaccttcaacctctcatcctcctcaccata 28992782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 296
Target Start/End: Original strand, 5585200 - 5585323
Alignment:
Q  173 ctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacc 272  Q
    ||||||||||  | ||| ||||||||||  |||| |||||||||||||||||||||||| |||| | || |||||||||  | || |||||| | ||||     
T  5585200 ctaatcttcactatctctttccaccacatggaacaactccggcccccatcctccaacctaccatgcaccgcaccatatcgtgtcaacaacaccctataca 5585299  T
Q  273 aaataccacctctatcaactaaca 296  Q
    | | || ||||||||| |||||||    
T  5585300 acagactacctctatcgactaaca 5585323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 36157657 - 36157727
Alignment:
Q  165 ccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctccca 235  Q
    |||||||||||||| ||   |||||| |||||||  |||||| ||||||||||||| ||||||||||||||    
T  36157657 ccccatctctaatcctcgccacctccctccaccaagaagaacaactccggcccccaacctccaacctccca 36157727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 309
Target Start/End: Original strand, 8902398 - 8902474
Alignment:
Q  233 ccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgccaacacca 309  Q
    ||||||||||||||||| |  ||||| ||||| | |||||| |  ||| |||||||||||||||| |||||||||||    
T  8902398 ccatcctcctcaccataacgagccactaacaccctataccacaagccagctctatcaactaacatccgccaacacca 8902474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 25090886 - 25090989
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| | |  | |||| |||||||| ||||||  |||||||||||||||||||| |  |||||| || |||||||  | |||||||    
T  25090886 cctatcccatctctaatcctgactatctccctccaccacgaagaacagctccggcccccatcctccaaaccaccatccgccacaccatacatagccacca 25090985  T
Q  261 acac 264  Q
    ||||    
T  25090986 acac 25090989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 15439635 - 15439688
Alignment:
Q  173 ctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctcc 226  Q
    ||||||||||  || ||||||||||| |||||||| |||||||||||| |||||    
T  15439635 ctaatcttcactacttccttccaccaaaaagaaccgctccggcccccaacctcc 15439688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 15530939 - 15530992
Alignment:
Q  173 ctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctcc 226  Q
    ||||||||||  || ||||||||||| |||||||| |||||||||||| |||||    
T  15530939 ctaatcttcactacttccttccaccaaaaagaaccgctccggcccccaacctcc 15530992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 43310798 - 43310870
Alignment:
Q  201 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 273  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| | ||||||    
T  43310798 aagaaccactccggcccccaacctccaacctcccatcctcctcgccatatctcgccaccaacaccctatacca 43310870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 26146757 - 26146826
Alignment:
Q  204 aaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 273  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| | ||||||    
T  26146757 aaccactccggcccccaacctccaacctcccatcctcctcgccatatctcgccaccaacaccctatacca 26146826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 273
Target Start/End: Original strand, 13416148 - 13416282
Alignment:
Q  142 aaaccaaccaacaccgccccctacc---ccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcc 238  Q
    |||||| ||||||||||||||  ||   || ||||||||| |  |||||||||||||||| | ||||||||||||||||||||||||||||||||||||     
T  13416148 aaaccagccaacaccgcccccaccctgcccttctctaatcctactaacctccttccaccaaatagaaccactccggcccccatcctccaacctcccatca 13416247  T
Q  239 tcctcaccatatctcgccaccaacactcgatacca 273  Q
      | ||||||| || || |||||||| ||||||||    
T  13416248 cgcacaccatacctagcaaccaacacccgatacca 13416282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 193 - 309
Target Start/End: Original strand, 37445624 - 37445740
Alignment:
Q  193 ccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaact 292  Q
    ||||||| |||||| ||||||||||||||||||||||||||  |||||| ||||||| || ||||||||||| | |  ||| |  ||| | |||||||||    
T  37445624 ccaccacgaagaacaactccggcccccatcctccaacctcctgtcctccgcaccatacctagccaccaacaccctacgccagaacccatcactatcaact 37445723  T
Q  293 aacatacgccaacacca 309  Q
    |||| ||||||||||||    
T  37445724 aacagacgccaacacca 37445740  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 187 - 309
Target Start/End: Original strand, 14440269 - 14440391
Alignment:
Q  187 ctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctcta 286  Q
    |||| |||||||| |||||| ||||||||||||||||||||| |  |||||| ||  |||||| || |||| |||||| | | |||| | |||||| |||    
T  14440269 ctccctccaccacgaagaacaactccggcccccatcctccaaaccaccatccgccataccatacctagccaacaacaccctacaccacaaaccaccccta 14440368  T
Q  287 tcaactaacatacgccaacacca 309  Q
    |||||||||| ||||||||||||    
T  14440369 tcaactaacaaacgccaacacca 14440391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 315
Target Start/End: Complemental strand, 44028940 - 44028707
Alignment:
Q  77 caccacagatcatgccaaaaaagagtagactccccatcccccacacgacgcaccacaccctcattaaaccaaccaa---caccgccccctaccccatctc 173  Q
    |||||| ||||||||||||||||||| | ||||||||| |||| |||   ||||||||  ||   ||||||||||    ||||||||| || |||||| |    
T  44028940 caccaccgatcatgccaaaaaagagtgg-ctccccatcacccatacgcgacaccacactttcccaaaaccaaccattatcaccgccccatatcccatccc 44028842  T
Q  174 taatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 273  Q
    ||||||||| |||||||  |||| ||  | |||||||||| ||||||       ||||||| ||||||||||||||||||||| | ||||| || |||||    
T  44028841 taatcttcacaacctccgcccacaacgtaaaaccactccgaccccca-------acctcccgtcctcctcaccatatctcgccgcaaacacacggtacca 44028749  T
Q  274 aataccacctctatcaactaacatacgccaacaccacttacc 315  Q
     |  ||| ||||||| |||||||| | ||| |||||||||||    
T  44028748 caacccatctctatccactaacatcctccagcaccacttacc 44028707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 2207453 - 2207390
Alignment:
Q  171 ctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctccc 234  Q
    |||||||| ||  ||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  2207453 ctctaatcctcccaacctccttccaccaaaaagaaccaccccggcccccatcctccaacctccc 2207390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 6727393 - 6727343
Alignment:
Q  187 ctccttccaccacaaagaaccactccggcccccatcctccaacctcccatc 237  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  6727393 ctccttccaccaaatagaaccactccggcccccatcctccaacctcccatc 6727343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 261
Target Start/End: Original strand, 6823916 - 6824010
Alignment:
Q  167 ccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaa 261  Q
    ||||| |||||||||   |||||||||||||||   ||| |||||||||||||| |||||||||||||  |||||||| ||||||||||| ||||    
T  6823916 ccatccctaatcttcgctacctccttccaccacggtgaaacactccggcccccaacctccaacctccctgcctcctcaacatatctcgccgccaa 6824010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 22725076 - 22725007
Alignment:
Q  165 ccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctccc 234  Q
    ||||||||| |||| ||| ||||| |  ||||||| |||||| |||||||||||||||||||||||||||    
T  22725076 ccccatctcaaatcctcacaaccttccgccaccacgaagaacaactccggcccccatcctccaacctccc 22725007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 10689094 - 10689165
Alignment:
Q  201 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 273  Q
    |||||||||||||||||| | |||||||||||| | |||| |||||||||||| |||||||||| | ||||||    
T  10689094 aagaaccactccggccccaa-cctccaacctcctagcctcatcaccatatctcaccaccaacaccctatacca 10689165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 9668641 - 9668574
Alignment:
Q  167 ccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctccc 234  Q
    |||||||||||| ||   |||||| |||||||  |||||| ||||||||||||| |||||||||||||    
T  9668641 ccatctctaatcctccccacctccctccaccaataagaacaactccggcccccaacctccaacctccc 9668574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 28253224 - 28253307
Alignment:
Q  166 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccata 249  Q
    ||||||||||||| |||  | |||| |||||||  |||||| ||||||||||||||||||||| |  |||||| || |||||||    
T  28253224 cccatctctaatcctcactatctccctccaccaagaagaacaactccggcccccatcctccaaacctccatccgccacaccata 28253307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 249
Target Start/End: Original strand, 32191609 - 32191652
Alignment:
Q  206 ccactccggcccccatcctccaacctcccatcctcctcaccata 249  Q
    |||||||||||||||||||||||||||||  |||| ||||||||    
T  32191609 ccactccggcccccatcctccaacctccctacctcatcaccata 32191652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 28400159 - 28400117
Alignment:
Q  193 ccaccacaaagaaccactccggcccccatcctccaacctccca 235  Q
    ||||||||||||| |||||||||||||  ||||||||||||||    
T  28400159 ccaccacaaagaaacactccggccccccacctccaacctccca 28400117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 309
Target Start/End: Complemental strand, 33515822 - 33515700
Alignment:
Q  187 ctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctcta 286  Q
    |||| |||||||| ||||||  ||||| |||||||||||||| |  |||||| || ||||||| || ||||||||||| | |  ||| |  ||| |||||    
T  33515822 ctccctccaccacgaagaacagctccgacccccatcctccaaaccaccatccgccacaccatacctagccaccaacaccctacgccacaacccatctcta 33515723  T
Q  287 tcaactaacatacgccaacacca 309  Q
    ||||||||||  || ||||||||    
T  33515722 tcaactaacaaccgtcaacacca 33515700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 28598467 - 28598526
Alignment:
Q  185 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcac 245  Q
    ||||||||||||||| ||||| ||||||| |||||| | ||||||||| ||| ||||||||    
T  28598467 acctccttccaccacgaagaaacactccgtccccca-catccaacctctcattctcctcac 28598526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 105484 - 105381
Alignment:
Q  161 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 260  Q
    |||| ||||||||||||| ||| || |||| |||||||| |||||| ||||||||||||||||||||| |  ||||||||| ||||||| || ||||| |    
T  105484 cctatcccatctctaatcctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccacta 105385  T
Q  261 acac 264  Q
    ||||    
T  105384 acac 105381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 55207 - 55273
Alignment:
Q  207 cactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 273  Q
    |||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||| | ||||||    
T  55207 cactccggcccccaacctccaacctctcatcctcctcgccatatctcgccaccaacaccctatacca 55273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 166 - 308
Target Start/End: Complemental strand, 34245 - 34103
Alignment:
Q  166 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacact 265  Q
    |||||| ||||||||||  || |||||||||||  | |||  ||||||||||||  |||||||||||||   |||||||||||||||||| |||| |||     
T  34245 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgtctcctcaccatatctcgctaccagcacc 34146  T
Q  266 cgataccaaataccacctctatcaactaacatacgccaacacc 308  Q
    | |||||||| |||| |||| || || ||||| ||||||||||    
T  34145 ctataccaaaaaccatctctctctaccaacattcgccaacacc 34103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 207 - 273
Target Start/End: Complemental strand, 143427 - 143361
Alignment:
Q  207 cactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 273  Q
    |||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||| | ||||||    
T  143427 cactccggcccccaacctccaacctctcatcctcctcgccatatctcgccaccaacaccctatacca 143361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 258
Target Start/End: Original strand, 6633 - 6684
Alignment:
Q  207 cactccggcccccatcctccaacctcccatcctcctcaccatatctcgccac 258  Q
    |||||| ||||||| |||||||||||||  ||||||||||||||||||||||    
T  6633 cactccagcccccaacctccaacctccctgcctcctcaccatatctcgccac 6684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 63876 - 63826
Alignment:
Q  225 ccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaa 275  Q
    ||||||||||  |||||||| ||||||||||||||||||||| ||||||||    
T  63876 ccaacctccctgcctcctcatcatatctcgccaccaacactctataccaaa 63826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 67619 - 67667
Alignment:
Q  201 aagaaccactccggcccccatcctccaacctcccatcctcctcaccata 249  Q
    |||||||||||| ||||||| |||||||||||||  |||||||||||||    
T  67619 aagaaccactccagcccccaacctccaacctccctgcctcctcaccata 67667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 28337 - 28385
Alignment:
Q  225 ccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 273  Q
    ||||||||||||||||||| |||||||| ||||||||||| | ||||||    
T  28337 ccaacctcccatcctcctcgccatatcttgccaccaacaccctatacca 28385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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