View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1193_low_25 (Length: 265)
Name: NF1193_low_25
Description: NF1193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1193_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 17269477 - 17269686
Alignment:
| Q |
1 |
tagaataaataaaattccatggagtcatgcatagtggatatactatggttttcttgttttgtttgatagctcctcgtacctgcgaaatctataggtcaaa |
100 |
Q |
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| T |
17269477 |
tagaataaataaaattccatggagtcatgcatagtggatatactatggttttcttgttttgtttgatagctcctcgtacctgcgaaatctataggtcaaa |
17269576 |
T |
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| Q |
101 |
gattgttccttgaacaccatttgttattcaaatttgatttaaatccttccaatcaaagtcttttgtttacaacatgagatcatacatttgtctttgatta |
200 |
Q |
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| T |
17269577 |
gattgttccttgaacaccatttgttattcaaatttgatttaaatccttccaatcaaagtcttttgtttacaacatgagatcatatatttgtctttgatta |
17269676 |
T |
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| Q |
201 |
attttttaaa |
210 |
Q |
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|||||||||| |
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| T |
17269677 |
attttttaaa |
17269686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 17269712 - 17269760
Alignment:
| Q |
207 |
taaaagtttggtagatatttgcacagttctaaatttaatgtggcctatg |
255 |
Q |
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||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
17269712 |
taaaagtttggtagatatttgcatagttctaaattttatgtggcctatg |
17269760 |
T |
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