View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1193_low_30 (Length: 251)

Name: NF1193_low_30
Description: NF1193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1193_low_30
NF1193_low_30
[»] chr8 (10 HSPs)
chr8 (10-251)||(2004671-2004912)
chr8 (19-248)||(1968726-1968955)
chr8 (12-248)||(2011668-2011904)
chr8 (20-251)||(2008061-2008292)
chr8 (21-164)||(2018459-2018602)
chr8 (21-251)||(2015076-2015306)
chr8 (21-251)||(1963123-1963353)
chr8 (12-248)||(1964790-1965026)
chr8 (100-251)||(2433012-2433163)
chr8 (10-70)||(2436704-2436764)
[»] chr1 (2 HSPs)
chr1 (21-145)||(5902402-5902526)
chr1 (21-134)||(5905897-5906010)
[»] scaffold0078 (3 HSPs)
scaffold0078 (24-108)||(22055-22139)
scaffold0078 (24-104)||(2805-2885)
scaffold0078 (24-104)||(57348-57428)
[»] scaffold0184 (1 HSPs)
scaffold0184 (24-104)||(15416-15496)


Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 2004671 - 2004912
Alignment:
Q  10 aagaatatcttattactcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2004671 aagaatatcttattactcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaac 2004770  T
Q  110 aaggttgctgtttatccaaccatgttagacattccaacccatcattagcatcaccggaactttctattgtcgggatgatgggtccaacaggatacacggg 209  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  2004771 aaggttgctgtttatccaaccatgttagacattccaacccatgattagcatcaccggaactttctatcgtcgggatgatgggtccaacaggatacacagg 2004870  T
Q  210 agggttttcacttccttcgtctttcattgctcttataggacc 251  Q
    |||||||||||||||||| ||||||||||| |||||||||||    
T  2004871 agggttttcacttccttcatctttcattgcacttataggacc 2004912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 1968955 - 1968726
Alignment:
Q  19 ttattactcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgct 118  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||| ||||| ||||    
T  1968955 ttattactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgct 1968856  T
Q  119 gtttatccaaccatgttagacattccaacccatcattagcatcaccggaactttctattgtcgggatgatgggtccaacaggatacacgggagggttttc 218  Q
    ||||||||||||| |  ||||| ||||| |||| |  | ||||||| ||||||  |  |||  |||| || ||||||||||||||||| |||||||| ||    
T  1968855 gtttatccaaccaggccagacactccaagccattagcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtc 1968756  T
Q  219 acttccttcgtctttcattgctcttatagg 248  Q
    |||||| || ||||||||||| ||||||||    
T  1968755 acttccctcctctttcattgcacttatagg 1968726  T

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Target: chr8; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 12 - 248
Target Start/End: Original strand, 2011668 - 2011904
Alignment:
Q  12 gaatatcttattactcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaa 111  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||    
T  2011668 gaatttctgattactcaattccaaacccaaagccagctcaacaatttgttcgtgtgaaagtgtaccaccactaccgaaagacacatacaaaactgaacaa 2011767  T
Q  112 ggttgctgtttatccaaccatgttagacattccaacccatcattagcatcaccggaactttctattgtcgggatgatgggtccaacaggatacacgggag 211  Q
    | ||| ||||| || |||||||  ||||| ||||| |||| |  | ||||| | |||| |  || |||| |||||||||||||||||||||| || | ||    
T  2011768 gattgttgtttgtctaaccatgacagacactccaaaccattagcatcatcaacagaacctgttactgtctggatgatgggtccaacaggatagacagaag 2011867  T
Q  212 ggttttcacttccttcgtctttcattgctcttatagg 248  Q
    ||||  |||||||||| ||| ||| |||  |||||||    
T  2011868 ggttgccacttccttcctctgtcaatgcatttatagg 2011904  T

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Target: chr8; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 2008061 - 2008292
Alignment:
Q  20 tattactcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgctg 119  Q
    ||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||    
T  2008061 tattactcaattccaaacccaaagctagctccacaatttgctcctgtgaaagtgtacctccactcccaaaagatacatacaaaaccgaacaaggttgctg 2008160  T
Q  120 tttatccaaccatgttagacattccaacccatcattagcatcaccggaactttctattgtcgggatgatgggtccaacaggatacacgggagggttttca 219  Q
    |||||||||||| |  ||||| ||||| |||| |  | ||||||| ||  ||  |  |||   ||| || ||||||||||||||||| |||||||| |||    
T  2008161 tttatccaaccaggccagacactccaagccattagcatcatcaccagattttgtttctgtttcgataataggtccaacaggatacactggagggttgtca 2008260  T
Q  220 cttccttcgtctttcattgctcttataggacc 251  Q
    | ||| || ||||||||||| |||| ||||||    
T  2008261 cctccctcctctttcattgcacttagaggacc 2008292  T

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Target: chr8; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 2018459 - 2018602
Alignment:
Q  21 attactcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgctgt 120  Q
    |||||||||||||||||||||||||||||||  |||||||||||| |||||||| || |||||||||||||| ||||||||||||||||||| |||||||    
T  2018459 attactcaattccaaacccaaagccagctcattaatttgttcttgcgaaagtgtgccaccactcccaaaagaaacatacaaaactgaacaagtttgctgt 2018558  T
Q  121 ttatccaaccatgttagacattccaacccatcattagcatcacc 164  Q
    || ||||||||||  ||||| | |||||||| || | |||||||    
T  2018559 ttgtccaaccatgccagacacttcaacccattatcatcatcacc 2018602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 251
Target Start/End: Original strand, 2015076 - 2015306
Alignment:
Q  21 attactcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgctgt 120  Q
    |||||||||||||||||||||||||||||||  |||||||||||| |||||||| || |||||||| ||||||||||||| ||||||||||||  | |||    
T  2015076 attactcaattccaaacccaaagccagctcattaatttgttcttgcgaaagtgttccaccactcccgaaagacacatacagaactgaacaaggccgttgt 2015175  T
Q  121 ttatccaaccatgttagacattccaacccatcattagcatcaccggaactttctattgtcgggatgatgggtccaacaggatacacgggagggttttcac 220  Q
    || ||||||||||  |||||||| |||  || |  | ||||||| ||  ||  || |||  |||| ||||||||||||| ||||||  || |||||||||    
T  2015176 ttgtccaaccatgccagacattcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcac 2015275  T
Q  221 ttccttcgtctttcattgctcttataggacc 251  Q
    ||||||||||| ||| ||||  |||||||||    
T  2015276 ttccttcgtctgtcagtgcttctataggacc 2015306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 1963353 - 1963123
Alignment:
Q  21 attactcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgctgt 120  Q
    |||||||||||||||||||||||||| |||| ||||||||||||| |||||||| || ||||| |||||||| ||||||||||||||||||||    |||    
T  1963353 attactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacattgt 1963254  T
Q  121 ttatccaaccatgttagacattccaacccatcattagcatcaccggaactttctattgtcgggatgatgggtccaacaggatacacgggagggttttcac 220  Q
    || ||||||||||| ||||| || |||  || |  | ||||||| ||  ||  || |||  |||| ||||||||||||| ||||||  || |||||||||    
T  1963253 ttgtccaaccatgtcagacactcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcac 1963154  T
Q  221 ttccttcgtctttcattgctcttataggacc 251  Q
    ||||||| ||| ||||||||  |||||||||    
T  1963153 ttccttcatctgtcattgcttctataggacc 1963123  T

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Target: chr8; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 248
Target Start/End: Complemental strand, 1965026 - 1964790
Alignment:
Q  12 gaatatcttattactcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaa 111  Q
    |||| ||| |||||||||||| || |||| |||||||| |||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||    
T  1965026 gaatttctgattactcaattctaaccccagagccagctgaacaatttgttcgtgtgaaagtgtaccaccactcccgaaagacacatacaaaactgaacaa 1964927  T
Q  112 ggttgctgtttatccaaccatgttagacattccaacccatcattagcatcac---cggaactttctattgtcgggatgatgggtccaacaggatacacgg 208  Q
    | ||| ||||| || |||||||  ||||| |||||   | ||||||||||||   | |||| |  || |||   |||||||||||||||||||||||| |    
T  1964926 gattgttgtttgtctaaccatgacagacactccaa---accattagcatcacggtcagaacatgttactgtatcgatgatgggtccaacaggatacacag 1964830  T
Q  209 gagggttttcacttccttcgtctttcattgctcttatagg 248  Q
     ||||||  |||||||||| ||| ||  |||| |||||||    
T  1964829 aagggttgccacttccttcctctgtcggtgcttttatagg 1964790  T

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Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 2433163 - 2433012
Alignment:
Q  100 aaaactgaacaaggttgctgtttatccaaccatgttagacattccaacccatcattagcatcaccg---gaactttctattgtcgggatgatgggtccaa 196  Q
    |||||||| |||||||| || | |||||||||||  ||||| ||||||  || |||||||||| ||   ||||||  ||||||| |||||||||||||||    
T  2433163 aaaactgagcaaggttgttggtcatccaaccatgacagacactccaac--at-attagcatcatcgtcagaacttgttattgtctggatgatgggtccaa 2433067  T
Q  197 caggatacacgggagggttttcacttccttcgtctttcattgctcttataggacc 251  Q
    ||||||||||  |||| |||||||||||||| ||| ||| |||| ||||||||||    
T  2433066 caggatacacaagaggattttcacttccttcatctgtcagtgcttttataggacc 2433012  T

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Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 2436764 - 2436704
Alignment:
Q  10 aagaatatcttattactcaattccaaacccaaagccagctcaacaatttgttcttgtgaaa 70  Q
    |||||| ||| ||||||| |||||| ||| |||||||||||||||||||||||||||||||    
T  2436764 aagaatttctgattactcgattccagaccgaaagccagctcaacaatttgttcttgtgaaa 2436704  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 5902526 - 5902402
Alignment:
Q  21 attactcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgctgt 120  Q
    |||||||||||||||||| | ||||| |||| ||||||||||||||||||||| ||| ||||| |||||||| ||||||||||||||||||||||| |||    
T  5902526 attactcaattccaaaccaatagccaactcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacatacaaaactgaacaaggttgttgt 5902427  T
Q  121 ttatccaaccatgttagacattcca 145  Q
    ||||  |||||||| ||||| ||||    
T  5902426 ttatgtaaccatgtcagacactcca 5902402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 5906010 - 5905897
Alignment:
Q  21 attactcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgctgt 120  Q
    |||||||||||||||||| | ||| |||||| || |||||||||||||||||| ||| || || |||||||| |||||||||||||||||||| ||||||    
T  5906010 attactcaattccaaaccaatagctagctcatcagtttgttcttgtgaaagtgcaccaccgcttccaaaagaaacatacaaaactgaacaaggctgctgt 5905911  T
Q  121 ttatccaaccatgt 134  Q
    ||||| ||||||||    
T  5905910 ttatctaaccatgt 5905897  T

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Target: scaffold0078 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 22139 - 22055
Alignment:
Q  24 actcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaa 108  Q
    ||||||||||||||| ||||| ||||||   ||||||  ||| |||||||| || ||||| |||||||| |||||||||||||||    
T  22139 actcaattccaaaccaaaagctagctcattgatttgtgtttgagaaagtgttccaccacttccaaaagaaacatacaaaactgaa 22055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 2885 - 2805
Alignment:
Q  24 actcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaac 104  Q
    ||||||||||||||| ||||| || |||   || |||  |||||||||||| || ||||| |||||||| |||||||||||    
T  2885 actcaattccaaaccaaaagctagttcattcatctgtctttgtgaaagtgttccaccacttccaaaagaaacatacaaaac 2805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 57428 - 57348
Alignment:
Q  24 actcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaac 104  Q
    ||||||||||||||| ||||| || |||   ||||||  ||| |||||||| || ||||| |||||||| |||||||||||    
T  57428 actcaattccaaaccaaaagctagttcatttatttgtgtttgagaaagtgttccaccacttccaaaagaaacatacaaaac 57348  T

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Target: scaffold0184 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 15416 - 15496
Alignment:
Q  24 actcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaac 104  Q
    ||||||||||||||| ||||| || |||   ||||||  ||| |||||||| || ||||| |||||||| |||||||||||    
T  15416 actcaattccaaaccaaaagctagttcatttatttgtgtttgagaaagtgttccaccacttccaaaagaaacatacaaaac 15496  T

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