View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1193_low_31 (Length: 243)
Name: NF1193_low_31
Description: NF1193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1193_low_31 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 23 - 243
Target Start/End: Original strand, 8608802 - 8609022
Alignment:
| Q |
23 |
aagaaactgaaattcataaacaaattgaataattaaaaggttctcaatcagaatcactttcctcatcagagtaatctttattaatcttgttcaaatcagc |
122 |
Q |
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| T |
8608802 |
aagaaactgaaattcataaacaaattgaataagtaaaaggttttcaatcagaatcactttcctcatcagagtaacctttattaatcttgttcaaagcaga |
8608901 |
T |
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| Q |
123 |
ttcaaatatcttctcaatctccttcagaaagtccacgaacacaaatatttcatgttgctctttgtcatcaatcaaattctttccttttatcattgcagca |
222 |
Q |
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| T |
8608902 |
ttcaaatatcttctcaagctccttcagaaagtccacaaacacaaatgtttcatgttgctctttgtcatcaatcaaattctttccttttatcattgcagca |
8609001 |
T |
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| Q |
223 |
ttgagcttcattttgtcagta |
243 |
Q |
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| T |
8609002 |
ttgagcttcattttgtcagta |
8609022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 167
Target Start/End: Original strand, 8569241 - 8569340
Alignment:
| Q |
68 |
aatcagaatcactttcctcatcagagtaatctttattaatcttgttcaaatcagcttcaaatatcttctcaatctccttcagaaagtccacgaacacaaa |
167 |
Q |
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| T |
8569241 |
aatccgaatcacttttctcatcagagtcacctttgttgatcttgttcatagcagattcaaagatgctctcaagctccttcagaaagtccacaaacacaaa |
8569340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 8575235 - 8575275
Alignment:
| Q |
74 |
aatcactttcctcatcagagtaatctttattaatcttgttc |
114 |
Q |
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| T |
8575235 |
aatcactttcctcatcagagtagcctttgttaatcttgttc |
8575275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 168
Target Start/End: Original strand, 12527434 - 12527534
Alignment:
| Q |
68 |
aatcagaatcactttcctcatcagagtaatctttattaatcttgttcaaatcagcttcaaatatcttctcaatctccttcagaaagtccacgaacacaaa |
167 |
Q |
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|||||||||||||||| ||| | |||||| |||| || ||||| |||||| ||| | |||| || |||||| |||||||| |||||||| |||||||| |
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| T |
12527434 |
aatcagaatcactttcttcaccggagtaacctttgttgatcttattcaaagcagatccaaagatgctctcaagctccttcaaaaagtccaaaaacacaaa |
12527533 |
T |
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| Q |
168 |
t |
168 |
Q |
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| T |
12527534 |
t |
12527534 |
T |
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