View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1193_low_33 (Length: 239)
Name: NF1193_low_33
Description: NF1193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1193_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 53623208 - 53623171
Alignment:
| Q |
106 |
attgggtttgaagattaataaatataatgaaggtgtgt |
143 |
Q |
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| T |
53623208 |
attgggtttgaagattaataaatataatgaaggtgtgt |
53623171 |
T |
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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 43190827 - 43190867
Alignment:
| Q |
111 |
gtttgaagattaataaatataatgaaggtgtgtgatgatgt |
151 |
Q |
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| T |
43190827 |
gtttgaagattaatagatataatgaaggtgtgtgatgatgt |
43190867 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 141
Target Start/End: Original strand, 27850538 - 27850573
Alignment:
| Q |
106 |
attgggtttgaagattaataaatataatgaaggtgt |
141 |
Q |
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| T |
27850538 |
attgggtttgaagattaataaatataatgaaggtgt |
27850573 |
T |
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