View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1193_low_35 (Length: 226)
Name: NF1193_low_35
Description: NF1193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1193_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 104 - 204
Target Start/End: Complemental strand, 6250263 - 6250163
Alignment:
| Q |
104 |
gtccaataatataacctgcaactttggcaattccaagagctagaccaattaaggaatatgtgaaagacatgaatgcagcaactgatgagagccaccatat |
203 |
Q |
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| T |
6250263 |
gtccaaaaatataacctgcaactttggcaattccaagagctagaccaattaaggaatatgtgaaagacatgaatgcagcaactgatgagagccaccatat |
6250164 |
T |
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| Q |
204 |
t |
204 |
Q |
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| T |
6250163 |
t |
6250163 |
T |
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Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 111 - 200
Target Start/End: Original strand, 39427964 - 39428053
Alignment:
| Q |
111 |
aatataacctgcaactttggcaattccaagagctagaccaattaaggaatatgtgaaagacatgaatgcagcaactgatgagagccacca |
200 |
Q |
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| T |
39427964 |
aatataacctgcaactttggcaattccaagtgctagaccaattagggaatatgtgaaagacatgactgcagcaactgatgagagccacca |
39428053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 111 - 200
Target Start/End: Original strand, 44315600 - 44315689
Alignment:
| Q |
111 |
aatataacctgcaactttggcaattccaagagctagaccaattaaggaatatgtgaaagacatgaatgcagcaactgatgagagccacca |
200 |
Q |
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| T |
44315600 |
aatataacctgcaactttggcaattgctagtccaaggccaataaaggaataggtgaaagacatgattgctgcaactattgagagccacca |
44315689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 44323537 - 44323625
Alignment:
| Q |
112 |
atataacctgcaactttggcaattccaagagctagaccaattaaggaatatgtgaaagacatgaatgcagcaactgatgagagccacca |
200 |
Q |
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| T |
44323537 |
atataacctgcaactttggaaattccaagagcaagagcaattgtggagtagaagaaagacatgactgcagcaactattgagagccacca |
44323625 |
T |
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