View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1193_low_5 (Length: 445)

Name: NF1193_low_5
Description: NF1193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1193_low_5
NF1193_low_5
[»] chr3 (3 HSPs)
chr3 (83-442)||(39550235-39550594)
chr3 (83-155)||(39253369-39253441)
chr3 (83-151)||(39552864-39552932)
[»] chr5 (1 HSPs)
chr5 (83-159)||(36248415-36248491)
[»] chr1 (2 HSPs)
chr1 (83-157)||(1235708-1235782)
chr1 (83-155)||(39825578-39825650)
[»] chr8 (2 HSPs)
chr8 (83-155)||(14180957-14181029)
chr8 (83-155)||(37877827-37877899)
[»] chr4 (3 HSPs)
chr4 (91-148)||(38487003-38487060)
chr4 (91-148)||(38495092-38495149)
chr4 (91-148)||(47819460-47819517)
[»] chr2 (1 HSPs)
chr2 (84-119)||(5872690-5872725)


Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 83 - 442
Target Start/End: Complemental strand, 39550594 - 39550235
Alignment:
Q  83 cgacttcactggggatcgaacccagaatctctggttccgtagaccagcgccttatccattgggccatgaagtcctgttgtgattattttaaccactgaat 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||    
T  39550594 cgacttcactggggatcgaacccagaatctctggttccgtagaccagcgccttatccattgggccatgaagtcctgttgtgattaatttacccactgtat 39550495  T
Q  183 tttaataaacaaataatttaccatagctcattctacaactttagctatggtgtatttctgcacgagacaatcctatgttgagttgaggaaccaaaccaag 282  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39550494 tttaataaacaaataatttaccatagctcattcttcaactttagctatggtgtatttctgcacaagacaatcctatgttgagttgaggaaccaaaccaag 39550395  T
Q  283 tcaacctatcttgtctgcaccgtttcaccaacaaagaacaaaacaacattacatagtaccttgtcttttaactttgcttaaacatgaaaaagaaacaatc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39550394 tcaacctatcttgtctgcaccgtttcaccaacaaagaacaaaacaacattacatagtaccttgtctttcaactttgcttaaacatgaaaaagaaacaatc 39550295  T
Q  383 tctgcgtaacaaagccaccaactttgtctctgtccttctcaaccccatctctgctcctcc 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39550294 tctgcgtaacaaagccaccaactttgtctctgtccttctcaaccccatctctgatcctcc 39550235  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 39253369 - 39253441
Alignment:
Q  83 cgacttcactggggatcgaacccagaatctctggttccgtagaccagcgccttatccattgggccatgaagtc 155  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39253369 cgactccactggggatcgaacccagaatctctggttccgtagaccagcgccttatccattgggccatggagtc 39253441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 39552932 - 39552864
Alignment:
Q  83 cgacttcactggggatcgaacccagaatctctggttccgtagaccagcgccttatccattgggccatga 151  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39552932 cgacttcactgggggtcgaacccagaatctctggttccgtagaccagcgccttatccattgggccatga 39552864  T

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Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 36248415 - 36248491
Alignment:
Q  83 cgacttcactggggatcgaacccagaatctctggttccgtagaccagcgccttatccattgggccatgaagtcctgt 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36248415 cgacttcactggggatcgaacccagaatctctggttccgtagaccagcgccttatccattgggccatgaagtcctgt 36248491  T

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Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 1235708 - 1235782
Alignment:
Q  83 cgacttcactggggatcgaacccagaatctctggttccgtagaccagcgccttatccattgggccatgaagtcct 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1235708 cgacttcactggggatcgaacccagaatctctggttccgtagaccagcgccttatccattgggccatgaagtcct 1235782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 39825578 - 39825650
Alignment:
Q  83 cgacttcactggggatcgaacccagaatctctggttccgtagaccagcgccttatccattgggccatgaagtc 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39825578 cgacttcactggggatcgaacccagaatctctggttccgtagaccagcgccttatccattgggccatgaagtc 39825650  T

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Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 14181029 - 14180957
Alignment:
Q  83 cgacttcactggggatcgaacccagaatctctggttccgtagaccagcgccttatccattgggccatgaagtc 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14181029 cgacttcactggggatcgaacccagaatctctggttccgtagaccagcgccttatccattgggccatgaagtc 14180957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 37877899 - 37877827
Alignment:
Q  83 cgacttcactggggatcgaacccagaatctctggttccgtagaccagcgccttatccattgggccatgaagtc 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37877899 cgacttcactggggatcgaacccagaatctctggttccgtagaccagcgccttatccattgggccatgaagtc 37877827  T

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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 38487060 - 38487003
Alignment:
Q  91 ctggggatcgaacccagaatctctggttccgtagaccagcgccttatccattgggcca 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38487060 ctggggatcgaacccagaatctctggttccgtagaccagcgccttatccattgggcca 38487003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 38495149 - 38495092
Alignment:
Q  91 ctggggatcgaacccagaatctctggttccgtagaccagcgccttatccattgggcca 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38495149 ctggggatcgaacccagaatctctggttccgtagaccagcgccttatccattgggcca 38495092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 47819460 - 47819517
Alignment:
Q  91 ctggggatcgaacccagaatctctggttccgtagaccagcgccttatccattgggcca 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47819460 ctggggatcgaacccagaatctctggttccgtagaccagcgccttatccattgggcca 47819517  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 119
Target Start/End: Complemental strand, 5872725 - 5872690
Alignment:
Q  84 gacttcactggggatcgaacccagaatctctggttc 119  Q
    |||||||||||||| |||||||||||||||||||||    
T  5872725 gacttcactggggaccgaacccagaatctctggttc 5872690  T

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