View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1193_low_6 (Length: 432)
Name: NF1193_low_6
Description: NF1193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1193_low_6 |
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| [»] scaffold0557 (1 HSPs) |
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| [»] scaffold0726 (2 HSPs) |
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Alignment Details
Target: scaffold0557 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 29 - 428
Target Start/End: Complemental strand, 10392 - 9994
Alignment:
| Q |
29 |
attcataactagaagatttgagaagtattacttatactcttcatcattaagttagtgtatgattgattggttagatcccaaaaggaaaatttatgcattg |
128 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
10392 |
attcataactagaagatttgagaagtatcacttatactcttcatcattaagttagtgtatgattgattggttagaacctaaaaggaaaatttatgcattg |
10293 |
T |
|
| Q |
129 |
ataaaatatgcactaacaccgcctgatactattagataaaatcaaatgaggaattaactaaaccaatagattgttttaaaaagatacaaaggcaaaccac |
228 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10292 |
atcaaatatgcactaacaccgcctgatactattagataaaatcaaatgaggaattaactaaaccaatagattgttttaaaaagatacaaaggcaaaccac |
10193 |
T |
|
| Q |
229 |
ctttttgttgtgacctattttcttttccatcttaccctccccctattgtaactactttacgaagtaacaaaattagaactatttacagtggttggatgtt |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| || ||||||||||||| || |||||||||||||| |
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| T |
10192 |
ctttttgttgtgacctattttcttttccatcttaccctccccctattataactattttacgaag-aaaaaaattagaactaagtaaagtggttggatgtt |
10094 |
T |
|
| Q |
329 |
gaagttggttacaatatattacagaaacaaaatgtaattgcactgtgcagtttagaaatctgcaacgttgatatgaagttatgatagtgaatatagattc |
428 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| || | ||||||||||||||||||||||| |||| ||||| || |||||||||||| |
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| T |
10093 |
gaagttggttacaatatatttcagaaacaaaatgtaattgcactatgaaatttagaaatctgcaacgttgataggaagatatgagagggaatatagattc |
9994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 29 - 428
Target Start/End: Original strand, 29464834 - 29465234
Alignment:
| Q |
29 |
attcataactagaagatttgagaagtattacttatactcttcatcattaagttagtgtatgattgattggttagatcccaaaaggaaaatttatgcattg |
128 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29464834 |
attcataactagaagatttgagaagtatcacttatactcttcatcattaagttagtgtatgattgattggttagatcccaaaaggaaaatttatgcattg |
29464933 |
T |
|
| Q |
129 |
ataaaatatgcactaacaccgcctgatactattagataaaatcaaatgaggaattaactaaaccaatagattgttttaaaaagatacaaaggcaaaccac |
228 |
Q |
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|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29464934 |
atcaaatatgcactaacaccgtctgatactattagataaaatcaaatgaggaattaactaaaccaatagattgttttaaaaagatacaaaggcaaaccac |
29465033 |
T |
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| Q |
229 |
ctttttgttgtgacctattttcttttccatcttaccctccccctattgtaactactttacgaag-taacaaaattagaactatttacagtggttggatgt |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||| || ||||||||||||| |
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| T |
29465034 |
ctttttgttgtgacctattttcttttccatcttaccctcctcctattgtaactactttacgaagaaaaaaaaattagaactaagtaaagtggttggatgt |
29465133 |
T |
|
| Q |
328 |
tgaagttggttacaatatattacagaaacaaaatgtaattgcactgtgcagtttagaaatctgcaacgttgatatgaagttatgatagtgaatatagatt |
427 |
Q |
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| ||||||||||||||||||| |||||| |||||||||||||| ||| | ||||||||||||||||||||||| |||| ||||| || ||||||||||| |
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| T |
29465134 |
taaagttggttacaatatatttcagaaataaaatgtaattgcatagtgaaatttagaaatctgcaacgttgataggaagatatgagagggaatatagatt |
29465233 |
T |
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| Q |
428 |
c |
428 |
Q |
| |
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| T |
29465234 |
c |
29465234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0726 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: scaffold0726
Description:
Target: scaffold0726; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 29 - 273
Target Start/End: Original strand, 1995 - 2239
Alignment:
| Q |
29 |
attcataactagaagatttgagaagtattacttatactcttcatcattaagttagtgtatgattgattggttagatcccaaaaggaaaatttatgcattg |
128 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1995 |
attcataactagaagatttgagaagtatcacttatactcttcatcattaagttagtgtatgattgattggttagatcccaaaaggaaaatttatgcactg |
2094 |
T |
|
| Q |
129 |
ataaaatatgcactaacaccgcctgatactattagataaaatcaaatgaggaattaactaaaccaatagattgttttaaaaagatacaaaggcaaaccac |
228 |
Q |
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|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2095 |
atcaaatatgcactaacaccgactgatactattagataaaatcaaatgaggaattaactaaaccaatagattgttttaaaaagatacaaaggcaaaccac |
2194 |
T |
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| Q |
229 |
ctttttgttgtgacctattttcttttccatcttaccctcccccta |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2195 |
ctttttgttgtgacctattttcttttccatcttaccctctcccta |
2239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0726; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 315 - 425
Target Start/End: Original strand, 2254 - 2364
Alignment:
| Q |
315 |
agtggttggatgttgaagttggttacaatatattacagaaacaaaatgtaattgcactgtgcagtttagaaatctgcaacgttgatatgaagttatgata |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||| ||||||||||| |||| ||||| | |
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| T |
2254 |
agtggttggatgttgaagttggttacaatatatttcagaaacaaaatgtaattgcactgtgaaatttagaaatctacaacgttgataggaagatatgaga |
2353 |
T |
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| Q |
415 |
gtgaatataga |
425 |
Q |
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| ||||||||| |
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| T |
2354 |
gggaatataga |
2364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 29 - 225
Target Start/End: Original strand, 7962856 - 7963052
Alignment:
| Q |
29 |
attcataactagaagatttgagaagtattacttatactcttcatcattaagttagtgtatgattgattggttagatcccaaaaggaaaatttatgcattg |
128 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7962856 |
attcataactagaagatttgagaagtatcacttatactctttatcattaagttagtgtatgattgattggttagatcccaaaagaaaaatttatgcattg |
7962955 |
T |
|
| Q |
129 |
ataaaatatgcactaacaccgcctgatactattagataaaatcaaatgaggaattaactaaaccaatagattgttttaaaaagatacaaaggcaaac |
225 |
Q |
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|| ||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7962956 |
atcaaatatgtactaacactgcctgatactattagataaaatcaaataaggaattaactaaaccaatagattgtgttaaaaagatacaaaggcaaac |
7963052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 52389568 - 52389487
Alignment:
| Q |
29 |
attcataactagaagatttgagaagtattacttatactcttcatcattaagttagtgtatgattgattggttagatcccaaa |
110 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52389568 |
attcataactagaagatttgagaagtatcacttatactcttcatcattaagttagtgtatgattgattggttagatcccaaa |
52389487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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