View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_high_10 (Length: 592)
Name: NF11940_high_10
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 213 - 582
Target Start/End: Original strand, 27069861 - 27070235
Alignment:
| Q |
213 |
ttgatatgttgttaacaaatttagagaaaatcaacaagggctgcaagcgattttagcatagttatgcggcggtattccttttggcgaggtggtgcggttg |
312 |
Q |
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| T |
27069861 |
ttgatctgttgttaacagatttagagaaaatcaacaagggctgcaagcgattttagcataattatgcggcggtattccttttggcgaggtggtgcggttg |
27069960 |
T |
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| Q |
313 |
gattctctggctgctggttttttggttttgtgttgaagtttgttgttagccagttttaggtgcagaaggtggagtttcactatgacgttgaggtattctt |
412 |
Q |
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||| || |||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27069961 |
gatcgtccggctgctggttttttggttttgtgttgaggtttgttgctagccggttttaggtgcagaaggtggagtttcactatgacgttggggtattctt |
27070060 |
T |
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| Q |
413 |
atttttggtttcggttttagctagaagtttgttgtttcgctgtttggctcaagcaagt-----gtgtggatgttttaaattatcttggaatatgttaatt |
507 |
Q |
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||||||||||||||||| ||||||||| ||| ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
27070061 |
atttttggtttcggtttcagctagaagcttgctgttttgctgtttggctcaagcaagtgtgtggtgtggatgttttaaattatgttggaatatgttaatt |
27070160 |
T |
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| Q |
508 |
agtaacatgttagatgggataggttgtttagtgctagctggtatgcttttttagttaggatgtgttgttgcttct |
582 |
Q |
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|| ||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
27070161 |
agcaacatgttagatgggatgggttgtttagtgctagctggtgtgcttttgtagttaggatgtgttgttgcttct |
27070235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 213 - 582
Target Start/End: Original strand, 27149947 - 27150321
Alignment:
| Q |
213 |
ttgatatgttgttaacaaatttagagaaaatcaacaagggctgcaagcgattttagcatagttatgcggcggtattccttttggcgaggtggtgcggttg |
312 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27149947 |
ttgatctgttgttaacagatttagagaaaatcaacaagggctgcaagcgattttagcataattatgcggcggtattccttttggcgaggtggtgcggttg |
27150046 |
T |
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| Q |
313 |
gattctctggctgctggttttttggttttgtgttgaagtttgttgttagccagttttaggtgcagaaggtggagtttcactatgacgttgaggtattctt |
412 |
Q |
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||| || |||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27150047 |
gatcgtccggctgctggttttttggttttgtgttgaggtttgttgctagccggttttaggtgcagaaggtggagtttcactatgacgttggggtattctt |
27150146 |
T |
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| Q |
413 |
atttttggtttcggttttagctagaagtttgttgtttcgctgtttggctcaagcaagt-----gtgtggatgttttaaattatcttggaatatgttaatt |
507 |
Q |
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||||||||||||||||| ||||||||| ||| ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
27150147 |
atttttggtttcggtttcagctagaagcttgctgttttgctgtttggctcaagcaagtgtgtggtgtggatgttttaaattatgttggaatatgttaatt |
27150246 |
T |
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| Q |
508 |
agtaacatgttagatgggataggttgtttagtgctagctggtatgcttttttagttaggatgtgttgttgcttct |
582 |
Q |
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|| ||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
27150247 |
agcaacatgttagatgggatgggttgtttagtgctagctggtgtgcttttgtagttaggatgtgttgttgcttct |
27150321 |
T |
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