View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_high_18 (Length: 464)
Name: NF11940_high_18
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Complemental strand, 45457298 - 45456866
Alignment:
| Q |
18 |
aaaaacagatctaaccaccacatgaaagcaagtcatgcttttgctagaagcctagtagaatagaagaagtgcagctttgatcacatgacatgatccatcc |
117 |
Q |
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| T |
45457298 |
aaaaacagatctaaccaccacatgaaagcaagtcatgcttttgctagaagcctagtagaatagaagaagtgcagctttgatcacatgacatgatccatcc |
45457199 |
T |
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| Q |
118 |
cgcaatcacgtgcagctagcttttcacgtgctgcgtggtccaaaggcaagnnnnnnncccacttgttgggtcataaatttcacatgcattcaccgcctat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||| |
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| T |
45457198 |
cgcaatcacgtgcagctagcttttcacgtgctgcgtggtccaaaggcaagaaaaaaacccacttgt----tcataaatttcacatgcattcacctcctat |
45457103 |
T |
|
| Q |
218 |
cccaagagtatattttttctccatgaattatctagattattgaattatgtgtttatcgtaataaatnnnnnnnntgtttttaaaattctctttttgatat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
45457102 |
cccaagagtatattttttctccatgaattatctagattattgaattatgtgtttatcataataaataaaaaaaatgtttttaaaattctctttttgatat |
45457003 |
T |
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| Q |
318 |
atttatgcaaactcgataatttacctacatgaccttcgttatggaaggttcaaatacacaacgatccgattacatagatgtccaaaacaataaccttgaa |
417 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45457002 |
atttatgcaaactcgaaaatttacctacatgaccttcgttgtgtaaggtccaaatacacaacgatccgattacatagatgtccaaaacaacaaccttgaa |
45456903 |
T |
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| Q |
418 |
ctttcactatcttagaacgccttaccagccccctatg |
454 |
Q |
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| T |
45456902 |
ccctcactatcttagaacgccttaccagccccctatg |
45456866 |
T |
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