View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_high_20 (Length: 445)
Name: NF11940_high_20
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 16 - 428
Target Start/End: Original strand, 45682659 - 45683071
Alignment:
| Q |
16 |
agcacagaacaattcataacaagttaaacaccacaacactagaattggaatttgattgcttcaatgacatcatgtatgacatgacatgattgtaatagga |
115 |
Q |
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| T |
45682659 |
agcagagaacaattcataacaagttaaacaccataacactagaattggaatttgattgcttcaatgacatcatgtatgacatgacatgattgtaatagga |
45682758 |
T |
|
| Q |
116 |
tcagttcagttataaaatgtgtcattgatcttcgtattctttattgactgcatgacgctaataatttagttttattacatcaaaaataatattcatatag |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45682759 |
tcagttcagttataaaatgtgtcattgatcttcgtattctttattgactgcatgacgctaataatttggttttattacatcaaaaataatattcatatag |
45682858 |
T |
|
| Q |
216 |
tcttcnnnnnnncttgctataatcttgcatttattttgcaaagcctatcttatcatgtgggaggctttcataactaacaagcagaactaattaagtataa |
315 |
Q |
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| T |
45682859 |
tcttcaaaaaaacttactataatcttgcatttattttgcaaagcctatcttatcatgtgggaggctttcataactaacaagcagtactaattaagtagaa |
45682958 |
T |
|
| Q |
316 |
attattttaatcattttaacaattgtaaacaatggtatccaaataaagcaaaaggtggtttgaaagcattaacgcttacaactatgatgatgggaaattt |
415 |
Q |
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| T |
45682959 |
actattttaatcattttaacaattgtaaacaatggtatccaaataaagcaaaaggtggtttgaaagcattaacgcctacaactatgatgatgggaaattt |
45683058 |
T |
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| Q |
416 |
gtgaagtaaaatt |
428 |
Q |
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| T |
45683059 |
gtgaagtaaaatt |
45683071 |
T |
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