View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11940_high_28 (Length: 408)

Name: NF11940_high_28
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11940_high_28
NF11940_high_28
[»] chr1 (2 HSPs)
chr1 (259-394)||(47192589-47192723)
chr1 (12-101)||(47192402-47192491)
[»] scaffold0393 (3 HSPs)
scaffold0393 (11-101)||(10948-11038)
scaffold0393 (322-392)||(10762-10834)
scaffold0393 (155-216)||(10833-10894)
[»] chr8 (13 HSPs)
chr8 (12-101)||(1668742-1668831)
chr8 (12-101)||(16659536-16659625)
chr8 (12-101)||(38520619-38520708)
chr8 (12-101)||(22015550-22015639)
chr8 (155-216)||(1668885-1668946)
chr8 (155-216)||(16659679-16659740)
chr8 (322-392)||(16659739-16659811)
chr8 (322-392)||(22015753-22015825)
chr8 (155-216)||(38520504-38520565)
chr8 (322-392)||(1668945-1669017)
chr8 (155-216)||(22015693-22015754)
chr8 (322-392)||(38520433-38520505)
chr8 (330-375)||(27185452-27185497)
[»] chr5 (3 HSPs)
chr5 (12-101)||(3174880-3174969)
chr5 (322-392)||(3175083-3175155)
chr5 (155-216)||(3175023-3175084)
[»] chr4 (8 HSPs)
chr4 (12-101)||(23217613-23217702)
chr4 (12-101)||(45144655-45144744)
chr4 (12-101)||(45153435-45153524)
chr4 (322-392)||(45144858-45144930)
chr4 (155-216)||(23217498-23217559)
chr4 (155-216)||(45144798-45144859)
chr4 (155-216)||(45153578-45153639)
chr4 (322-392)||(23217427-23217499)
[»] chr3 (7 HSPs)
chr3 (12-101)||(2338209-2338298)
chr3 (12-101)||(21239804-21239893)
chr3 (155-216)||(2338094-2338155)
chr3 (155-216)||(21239947-21240008)
chr3 (322-392)||(2338023-2338095)
chr3 (320-385)||(12707358-12707423)
chr3 (331-371)||(52894098-52894138)
[»] chr2 (6 HSPs)
chr2 (12-101)||(3934686-3934775)
chr2 (12-101)||(38975059-38975148)
chr2 (326-392)||(3934501-3934569)
chr2 (322-392)||(38974879-38974951)
chr2 (155-216)||(3934572-3934632)
chr2 (163-216)||(38974950-38975003)


Alignment Details
Target: chr1 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 259 - 394
Target Start/End: Original strand, 47192589 - 47192723
Alignment:
Q  259 ctttagtttggcccttgtggtgttggtgcgctgcacttgagtgtttgcagtctggctgtgtttttggctagttcgggagtgagacaggggtatgcttgct 358  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  47192589 ctttagtttggccctt-tggtgttggtgcgctgcacttgggtgtttgcagtctggctgtgtttttggctagttcaggagtgagacaggggtatgcttgct 47192687  T
Q  359 ctatgctagtatacttcggtcttattgtttgatgtc 394  Q
    ||||||||||||||||||| ||||||||||||||||    
T  47192688 ctatgctagtatacttcggccttattgtttgatgtc 47192723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 47192402 - 47192491
Alignment:
Q  12 aaaagaactttgagtttgacaactagctagagcaagagccataggagagatcatggtttagtatttggagctgtccgggccttgctgcca 101  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  47192402 aaaagaactttgagtttgacaactagatagagcaagagccataggagagatcatggtttagtatttggacctgtccgggccttgctgcca 47192491  T

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Target: scaffold0393 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 11038 - 10948
Alignment:
Q  11 aaaaagaactttgagtttgacaactagctagagcaagagccataggagagatcatggtttagtatttggagctgtccgggccttgctgcca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||| ||||||    
T  11038 aaaaagaactttgagtttgacaactagctagagcaagagccataggagagatcatggtttagtatttagagctgtctgtgccttactgcca 10948  T

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Target: scaffold0393; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 322 - 392
Target Start/End: Complemental strand, 10834 - 10762
Alignment:
Q  322 ttggctagttcgggagtgagacaggggtatgcttgctctatgctag--tatacttcggtcttattgtttgatg 392  Q
    |||||||||||||||||||| |||||||||||||||||||||||||  |||||||||| || |||||||||||    
T  10834 ttggctagttcgggagtgaggcaggggtatgcttgctctatgctagtatatacttcggcctcattgtttgatg 10762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 10894 - 10833
Alignment:
Q  155 agcagatcagcgctgcttgcaactgtttttctgtctttggtggttgttgttcgatgatgctt 216  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| | ||| |||||||||    
T  10894 agcagatcagcgctgcttgcagctgtttttctgtctttggtggttggttttcaatgatgctt 10833  T

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Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 1668742 - 1668831
Alignment:
Q  12 aaaagaactttgagtttgacaactagctagagcaagagccataggagagatcatggtttagtatttggagctgtccgggccttgctgcca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| ||||||    
T  1668742 aaaagaactttgagtttgacaactagctagagcaagagccataggagagatcatggtttagtattcggagctgtctgtgccttactgcca 1668831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 16659536 - 16659625
Alignment:
Q  12 aaaagaactttgagtttgacaactagctagagcaagagccataggagagatcatggtttagtatttggagctgtccgggccttgctgcca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| ||||||    
T  16659536 aaaagaactttgagtttgacaactagctagagcaagagccataggagagatcatggtttagtattcggagctgtctgtgccttactgcca 16659625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 38520708 - 38520619
Alignment:
Q  12 aaaagaactttgagtttgacaactagctagagcaagagccataggagagatcatggtttagtatttggagctgtccgggccttgctgcca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| ||||||    
T  38520708 aaaagaactttgagtttgacaactagctagagcaagagccataggagagatcatggtttagtattcggagctgtctgtgccttactgcca 38520619  T

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Target: chr8; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 22015550 - 22015639
Alignment:
Q  12 aaaagaactttgagtttgacaactagctagagcaagagccataggagagatcatggtttagtatttggagctgtccgggccttgctgcca 101  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| | ||||| ||||||    
T  22015550 aaaagaactttgagtttcacaactagctagagcaagagccataggagagatcatagtttagtattcggagctgtctgtgccttactgcca 22015639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 1668885 - 1668946
Alignment:
Q  155 agcagatcagcgctgcttgcaactgtttttctgtctttggtggttgttgttcgatgatgctt 216  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| | ||| |||||||||    
T  1668885 agcagatcagcgctgcttgcagctgtttttctgtctttggtggttgcttttcaatgatgctt 1668946  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 16659679 - 16659740
Alignment:
Q  155 agcagatcagcgctgcttgcaactgtttttctgtctttggtggttgttgttcgatgatgctt 216  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| | ||| |||||||||    
T  16659679 agcagatcagcgctgcttgcagctgtttttctgtctttggtggttgcttttcaatgatgctt 16659740  T

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Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 322 - 392
Target Start/End: Original strand, 16659739 - 16659811
Alignment:
Q  322 ttggctagttcgggagtgagacaggggtatgcttgctctatgctag--tatacttcggtcttattgtttgatg 392  Q
    |||||||||||||||||||  |||||||||||||||||||||||||  |||||||||| || |||||||||||    
T  16659739 ttggctagttcgggagtgatgcaggggtatgcttgctctatgctagtatatacttcggcctcattgtttgatg 16659811  T

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Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 322 - 392
Target Start/End: Original strand, 22015753 - 22015825
Alignment:
Q  322 ttggctagttcgggagtgagacaggggtatgcttgctctatgctag--tatacttcggtcttattgtttgatg 392  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||  |||||||||| || |||||||||||    
T  22015753 ttggctagttcaggagtgaggcaggggtatgcttgctctatgctagtatatacttcggcctcattgtttgatg 22015825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 38520565 - 38520504
Alignment:
Q  155 agcagatcagcgctgcttgcaactgtttttctgtctttggtggttgttgttcgatgatgctt 216  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| | ||| |||||||||    
T  38520565 agcagatcagcgctgcttgcagctgtttttctgtctttggtggttgcttttcaatgatgctt 38520504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 392
Target Start/End: Original strand, 1668945 - 1669017
Alignment:
Q  322 ttggctagttcgggagtgagacaggggtatgcttgctctatgctag--tatacttcggtcttattgtttgatg 392  Q
    ||||||||||| ||||||||  ||||||||||||||||||||||||  |||||||||| || |||||||||||    
T  1668945 ttggctagttcaggagtgaggtaggggtatgcttgctctatgctagtatatacttcggcctcattgtttgatg 1669017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 22015693 - 22015754
Alignment:
Q  155 agcagatcagcgctgcttgcaactgtttttctgtctttggtggttgttgttcgatgatgctt 216  Q
    ||||||||||||||||||||| ||||||||||||||||||||| || | ||| |||||||||    
T  22015693 agcagatcagcgctgcttgcagctgtttttctgtctttggtggatgcttttcaatgatgctt 22015754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 392
Target Start/End: Complemental strand, 38520505 - 38520433
Alignment:
Q  322 ttggctagttcgggagtgagacaggggtatgcttgctctatgctag--tatacttcggtcttattgtttgatg 392  Q
    ||||||||||| ||||||||  ||||||||||||||||||||||||  |||||||||| || |||||||||||    
T  38520505 ttggctagttcaggagtgaggaaggggtatgcttgctctatgctagtatatacttcggcctcattgtttgatg 38520433  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 375
Target Start/End: Complemental strand, 27185497 - 27185452
Alignment:
Q  330 ttcgggagtgagacaggggtatgcttgctctatgctagtatacttc 375  Q
    |||||||||||| ||||||||||||||| | |||| ||||||||||    
T  27185497 ttcgggagtgaggcaggggtatgcttgccccatgcaagtatacttc 27185452  T

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Target: chr5 (Bit Score: 74; Significance: 8e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 3174880 - 3174969
Alignment:
Q  12 aaaagaactttgagtttgacaactagctagagcaagagccataggagagatcatggtttagtatttggagctgtccgggccttgctgcca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| ||||||    
T  3174880 aaaagaactttgagtttgacaactagctagagcaagagccataggagagatcatggtttagtattcggagctgtctgtgccttactgcca 3174969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 322 - 392
Target Start/End: Original strand, 3175083 - 3175155
Alignment:
Q  322 ttggctagttcgggagtgagacaggggtatgcttgctctatgctag--tatacttcggtcttattgtttgatg 392  Q
    |||||||||||||||||||| |||||||||||||||||||||||||  |||||||||| || |||||||||||    
T  3175083 ttggctagttcgggagtgaggcaggggtatgcttgctctatgctagtatatacttcggcctcattgtttgatg 3175155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 3175023 - 3175084
Alignment:
Q  155 agcagatcagcgctgcttgcaactgtttttctgtctttggtggttgttgttcgatgatgctt 216  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| | ||| |||||||||    
T  3175023 agcagatcagcgctgcttgcagctgtttttctgtctttggtggttgcttttcaatgatgctt 3175084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 8e-34; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 23217702 - 23217613
Alignment:
Q  12 aaaagaactttgagtttgacaactagctagagcaagagccataggagagatcatggtttagtatttggagctgtccgggccttgctgcca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| ||||||    
T  23217702 aaaagaactttgagtttgacaactagctagagcaagagccataggagagatcatggtttagtattcggagctgtctgtgccttactgcca 23217613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 45144655 - 45144744
Alignment:
Q  12 aaaagaactttgagtttgacaactagctagagcaagagccataggagagatcatggtttagtatttggagctgtccgggccttgctgcca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| ||||||    
T  45144655 aaaagaactttgagtttgacaactagctagagcaagagccataggagagatcatggtttagtattcggagctgtctgtgccttactgcca 45144744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 45153435 - 45153524
Alignment:
Q  12 aaaagaactttgagtttgacaactagctagagcaagagccataggagagatcatggtttagtatttggagctgtccgggccttgctgcca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| ||||||    
T  45153435 aaaagaactttgagtttgacaactagctagagcaagagccataggagagatcatggtttagtattcggagctgtctgtgccttactgcca 45153524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 322 - 392
Target Start/End: Original strand, 45144858 - 45144930
Alignment:
Q  322 ttggctagttcgggagtgagacaggggtatgcttgctctatgctag--tatacttcggtcttattgtttgatg 392  Q
    |||||||||||||||||||| |||||||||||||||||||||||||  |||||||||| || |||||||||||    
T  45144858 ttggctagttcgggagtgaggcaggggtatgcttgctctatgctagtatatacttcggcctcattgtttgatg 45144930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 23217559 - 23217498
Alignment:
Q  155 agcagatcagcgctgcttgcaactgtttttctgtctttggtggttgttgttcgatgatgctt 216  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| | ||| |||||||||    
T  23217559 agcagatcagcgctgcttgcagctgtttttctgtctttggtggttgcttttcaatgatgctt 23217498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 45144798 - 45144859
Alignment:
Q  155 agcagatcagcgctgcttgcaactgtttttctgtctttggtggttgttgttcgatgatgctt 216  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| | ||| |||||||||    
T  45144798 agcagatcagcgctgcttgcagctgtttttctgtctttggtggttgcttttcaatgatgctt 45144859  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 45153578 - 45153639
Alignment:
Q  155 agcagatcagcgctgcttgcaactgtttttctgtctttggtggttgttgttcgatgatgctt 216  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| | ||| |||||||||    
T  45153578 agcagatcagcgctgcttgcagctgtttttctgtctttggtggttgcttttcaatgatgctt 45153639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 392
Target Start/End: Complemental strand, 23217499 - 23217427
Alignment:
Q  322 ttggctagttcgggagtgagacaggggtatgcttgctctatgctag--tatacttcggtcttattgtttgatg 392  Q
    ||||||||||| ||||||||  ||||||||||||||||||||||||  |||||||||| || |||||||||||    
T  23217499 ttggctagttcaggagtgaggtaggggtatgcttgctctatgctagtatatacttcggcctcattgtttgatg 23217427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 2338298 - 2338209
Alignment:
Q  12 aaaagaactttgagtttgacaactagctagagcaagagccataggagagatcatggtttagtatttggagctgtccgggccttgctgcca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| ||||||    
T  2338298 aaaagaactttgagtttgacaactagctagagcaagagccataggagagatcatggtttagtattcggagctgtctgtgccttactgcca 2338209  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 21239804 - 21239893
Alignment:
Q  12 aaaagaactttgagtttgacaactagctagagcaagagccataggagagatcatggtttagtatttggagctgtccgggccttgctgcca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| ||||||    
T  21239804 aaaagaactttgagtttgacaactagctagagcaagagccataggagagatcatggtttagtattcggagctgtctgtgccttactgcca 21239893  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 2338155 - 2338094
Alignment:
Q  155 agcagatcagcgctgcttgcaactgtttttctgtctttggtggttgttgttcgatgatgctt 216  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| | ||| |||||||||    
T  2338155 agcagatcagcgctgcttgcagctgtttttctgtctttggtggttgcttttcaatgatgctt 2338094  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 21239947 - 21240008
Alignment:
Q  155 agcagatcagcgctgcttgcaactgtttttctgtctttggtggttgttgttcgatgatgctt 216  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| | ||| |||||||||    
T  21239947 agcagatcagcgctgcttgcagctgtttttctgtctttggtggttgcttttcaatgatgctt 21240008  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 392
Target Start/End: Complemental strand, 2338095 - 2338023
Alignment:
Q  322 ttggctagttcgggagtgagacaggggtatgcttgctctatgctag--tatacttcggtcttattgtttgatg 392  Q
    ||||||||||| ||||||||  ||||||||||||||||||||||||  |||||||||| || |||||||||||    
T  2338095 ttggctagttcaggagtgaggtaggggtatgcttgctctatgctagtatatacttcggcctcattgtttgatg 2338023  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 385
Target Start/End: Original strand, 12707358 - 12707423
Alignment:
Q  320 ttttggctagttcgggagtgagacaggggtatgcttgctctatgctagtatacttcggtcttattg 385  Q
    |||||||| ||| || |||||  |||| |||||||||||| ||||||||||||||||| |||||||    
T  12707358 ttttggcttgtttggaagtgatgcaggagtatgcttgctccatgctagtatacttcggccttattg 12707423  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 371
Target Start/End: Original strand, 52894098 - 52894138
Alignment:
Q  331 tcgggagtgagacaggggtatgcttgctctatgctagtata 371  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  52894098 tcgggagtgaggcaggggtatgcttgctctgtgctagtata 52894138  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 3934775 - 3934686
Alignment:
Q  12 aaaagaactttgagtttgacaactagctagagcaagagccataggagagatcatggtttagtatttggagctgtccgggccttgctgcca 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| | ||||| ||||||    
T  3934775 aaaagaactttgagtttgacaactagctagagcaagagccataggagagatcatggtttagtattcagagctgtctgtgccttactgcca 3934686  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 38975148 - 38975059
Alignment:
Q  12 aaaagaactttgagtttgacaactagctagagcaagagccataggagagatcatggtttagtatttggagctgtccgggccttgctgcca 101  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| | ||||| ||||||    
T  38975148 aaaagaactttgagtttgacaactagcttgagcaagagccataggagagatcatggtttagtattcggagctgtctgtgccttactgcca 38975059  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 326 - 392
Target Start/End: Complemental strand, 3934569 - 3934501
Alignment:
Q  326 ctagttcgggagtgagacaggggtatgcttgctctatgctag--tatacttcggtcttattgtttgatg 392  Q
    |||||||||||||||| |||||||||||||||||||||||||  |||||||||| || |||||||||||    
T  3934569 ctagttcgggagtgaggcaggggtatgcttgctctatgctagtatatacttcggcctcattgtttgatg 3934501  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 322 - 392
Target Start/End: Complemental strand, 38974951 - 38974879
Alignment:
Q  322 ttggctagttcgggagtgagacaggggtatgcttgctctatgctag--tatacttcggtcttattgtttgatg 392  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||  |||||||||| || |||||||||||    
T  38974951 ttggctagttcgggagtgaggcaggggtatgcttactctatgctagtatatacttcggcctcattgtttgatg 38974879  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 3934632 - 3934572
Alignment:
Q  155 agcagatcagcgctgcttgcaactgtttttctgtctttggtggttgttgttcgatgatgctt 216  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||| | ||| |||||||||    
T  3934632 agcagatcagcgctgcttgcagctg-ttttctgtctttggtggttgcttttcaatgatgctt 3934572  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 38975003 - 38974950
Alignment:
Q  163 agcgctgcttgcaactgtttttctgtctttggtggttgttgttcgatgatgctt 216  Q
    ||||||||||||| |||||||||||||||||||||||| | ||| |||||||||    
T  38975003 agcgctgcttgcagctgtttttctgtctttggtggttgcttttcaatgatgctt 38974950  T

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