View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11940_high_29 (Length: 406)

Name: NF11940_high_29
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11940_high_29
NF11940_high_29
[»] chr8 (2 HSPs)
chr8 (1-388)||(32145004-32145393)
chr8 (232-280)||(1979412-1979460)
[»] chr6 (2 HSPs)
chr6 (233-273)||(10620639-10620679)
chr6 (238-283)||(1790846-1790891)
[»] chr7 (1 HSPs)
chr7 (233-279)||(37775983-37776029)
[»] chr4 (3 HSPs)
chr4 (221-279)||(2796535-2796593)
chr4 (233-279)||(22596992-22597038)
chr4 (234-279)||(30108078-30108124)
[»] chr3 (3 HSPs)
chr3 (343-388)||(34882034-34882079)
chr3 (225-257)||(9791348-9791380)
chr3 (231-279)||(18180538-18180586)
[»] chr2 (3 HSPs)
chr2 (235-279)||(830969-831013)
chr2 (221-261)||(17195373-17195413)
chr2 (233-265)||(33498629-33498661)


Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 32145004 - 32145393
Alignment:
Q  1 cttgaccttcaaaagtacagagaaacttctgaaatgctcatgtgcaatcttctaccagattcaccaacagccacaaccaacagaaccaaaagtaggattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32145004 cttgaccttcaaaagtacagagaaacttctgaaatgctcatgtgcaatcttctaccagattcaccaacagccacaaccaacagaaccaaaagtaggattc 32145103  T
Q  101 atttcttccctgtagcatttccatagtccatgtgcattcacttctgtttgttaattcaggaaaaaagcttgcttgcattttaagtcaattaggcatgtta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32145104 atttcttccctgtagcatttccatagtccatgtgcattcacttctgtttgttaattcaggaaaaaagcttgcttgcattttaagtcaattaggcatgtta 32145203  T
Q  201 gttatgaaacatagacatgt--attgacactttaacaccagtaataatttgagaaaatggaataattaaacgtaatcacatatgtgagacaccggacatg 298  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32145204 gttatgaaacatagacatgtacattgacactttaacaccagtaataatttgagaaaatggaataattaaacgtaatcacatatgtgagacaccggacatg 32145303  T
Q  299 tcttcaacctaaagtgtcgatgttataaaggttgttactcatacaaactttgattgcaaaacaggtggacagatctgggtggtaccatgg 388  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32145304 tcttcaacctaaagtgttgatgttataaaggttgttactcatacaaactttgattgcaaaacaggtggacagatctgggtggtaccatgg 32145393  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 280
Target Start/End: Original strand, 1979412 - 1979460
Alignment:
Q  232 aacaccagtaataatttgagaaaatggaataattaaacgtaatcacata 280  Q
    |||||| ||||||||||||||||||  | |||||||| |||||||||||    
T  1979412 aacaccggtaataatttgagaaaattaattaattaaatgtaatcacata 1979460  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 10620639 - 10620679
Alignment:
Q  233 acaccagtaataatttgagaaaatggaataattaaacgtaa 273  Q
    |||||||||||||||||||||||| ||||||||||| ||||    
T  10620639 acaccagtaataatttgagaaaatagaataattaaaagtaa 10620679  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 1790891 - 1790846
Alignment:
Q  238 agtaataatttgagaaaatggaataattaaacgtaatcacatatgt 283  Q
    |||||||||||||||||||||||| | |||| ||||||| ||||||    
T  1790891 agtaataatttgagaaaatggaattaataaatgtaatcatatatgt 1790846  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 37775983 - 37776029
Alignment:
Q  233 acaccagtaataatttgagaaaatggaataattaaacgtaatcacat 279  Q
    ||||||||| |||||||||||||||  ||||||||| ||||||||||    
T  37775983 acaccagtagtaatttgagaaaatgacataattaaatgtaatcacat 37776029  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 2796535 - 2796593
Alignment:
Q  221 attgacactttaacaccagtaataatttgagaaaatggaataattaaacgtaatcacat 279  Q
    |||||||||| ||||||| |||||||||||||||||| | ||||| ||  |||||||||    
T  2796535 attgacacttcaacaccattaataatttgagaaaatgaattaattgaatttaatcacat 2796593  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 22597038 - 22596992
Alignment:
Q  233 acaccagtaataatttgagaaaatggaataattaaacgtaatcacat 279  Q
    |||||| ||||||||||||||||| | |||||| |||||||||||||    
T  22597038 acaccaataataatttgagaaaattgcataattcaacgtaatcacat 22596992  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 279
Target Start/End: Complemental strand, 30108124 - 30108078
Alignment:
Q  234 caccagtaataatttgagaaaatggaa-taattaaacgtaatcacat 279  Q
    |||| |||||||||||||||||||||| ||||| |||||||||||||    
T  30108124 caccggtaataatttgagaaaatggaagtaattgaacgtaatcacat 30108078  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 388
Target Start/End: Original strand, 34882034 - 34882079
Alignment:
Q  343 aaactttgattgcaaaacaggtggacagatctgggtggtaccatgg 388  Q
    ||||||||||||||||||||||||||  ||| | ||||||||||||    
T  34882034 aaactttgattgcaaaacaggtggactaatccgagtggtaccatgg 34882079  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 9791348 - 9791380
Alignment:
Q  225 acactttaacaccagtaataatttgagaaaatg 257  Q
    |||||||||||||| ||||||||||||||||||    
T  9791348 acactttaacaccattaataatttgagaaaatg 9791380  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 18180538 - 18180586
Alignment:
Q  231 taacaccagtaataatttgagaaaatggaataattaaacgtaatcacat 279  Q
    ||||| || |||||||||||||||||| |||||||||| ||||| ||||    
T  18180538 taacatcaataataatttgagaaaatgaaataattaaatgtaattacat 18180586  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 830969 - 831013
Alignment:
Q  235 accagtaataatttgagaaaatggaataattaaacgtaatcacat 279  Q
    |||||||||||||||| |||||| | |||||||||||||| ||||    
T  830969 accagtaataatttgataaaatgaattaattaaacgtaataacat 831013  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 17195413 - 17195373
Alignment:
Q  221 attgacactttaacaccagtaataatttgagaaaatggaat 261  Q
    |||||||| | ||||||||||||||||||| ||||||||||    
T  17195413 attgacacataaacaccagtaataatttgataaaatggaat 17195373  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 33498629 - 33498661
Alignment:
Q  233 acaccagtaataatttgagaaaatggaataatt 265  Q
    |||| ||||||||||||||||||||||||||||    
T  33498629 acacaagtaataatttgagaaaatggaataatt 33498661  T

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