View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11940_high_3 (Length: 825)

Name: NF11940_high_3
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11940_high_3
NF11940_high_3
[»] chr4 (5 HSPs)
chr4 (259-807)||(24201447-24201991)
chr4 (162-250)||(39310404-39310492)
chr4 (169-230)||(9482685-9482746)
chr4 (162-259)||(31414820-31414917)
chr4 (185-258)||(27340751-27340824)
[»] chr3 (8 HSPs)
chr3 (155-258)||(10991180-10991281)
chr3 (179-258)||(40613055-40613134)
chr3 (187-262)||(40613797-40613872)
chr3 (162-258)||(10991842-10991938)
chr3 (174-250)||(34936723-34936799)
chr3 (202-258)||(52103508-52103564)
chr3 (162-207)||(34329409-34329454)
chr3 (162-207)||(34330090-34330135)
[»] chr8 (2 HSPs)
chr8 (155-252)||(16871297-16871394)
chr8 (162-250)||(41889331-41889420)
[»] chr7 (3 HSPs)
chr7 (162-258)||(25675719-25675815)
chr7 (162-259)||(18947285-18947382)
chr7 (169-230)||(46295627-46295688)
[»] chr2 (7 HSPs)
chr2 (155-258)||(33361748-33361851)
chr2 (162-259)||(4854472-4854569)
chr2 (155-259)||(20268121-20268225)
chr2 (155-258)||(20267998-20268101)
chr2 (162-260)||(10147784-10147882)
chr2 (185-250)||(39064584-39064649)
chr2 (162-258)||(10148586-10148682)
[»] scaffold0098 (1 HSPs)
scaffold0098 (162-260)||(52262-52360)
[»] chr1 (2 HSPs)
chr1 (156-258)||(30430391-30430493)
chr1 (183-250)||(15668273-15668340)
[»] chr5 (3 HSPs)
chr5 (162-250)||(19778734-19778822)
chr5 (162-258)||(43379457-43379553)
chr5 (162-259)||(3636368-3636465)
[»] scaffold0330 (2 HSPs)
scaffold0330 (162-258)||(12517-12613)
scaffold0330 (185-250)||(13237-13302)
[»] chr6 (1 HSPs)
chr6 (174-259)||(18065718-18065803)


Alignment Details
Target: chr4 (Bit Score: 511; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 259 - 807
Target Start/End: Original strand, 24201447 - 24201991
Alignment:
Q  259 cccttgaacagctagcaagcaaagaatctagatttgataacatacaccaaccttgcataacaaaacgagcgacactgaattttttgtatgtttgtgtcac 358  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24201447 cccttgaagagctagcaagcaaaga-tctagatttgataacatacaccaaccttgcataacaaaacgagcgacactgaattttttgtatgtttgtgacac 24201545  T
Q  359 tgactcgactctgtatactactaattaaagttttgttcgtgattatcatccgtgcatctattatgattaactttaaatgatagaatttttgttttattat 458  Q
    |||||||||||||||||||   ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24201546 tgactcgactctgtatact---aattaaatttttgttcgtgattatcatccgtgcatctattatgattaactttaaatgatagaatttttgttttattat 24201642  T
Q  459 tgattttgtaaaataaggcaagaagagaaaaaatagtcttgtgggtaaaattgtaattgaaacaaatgagtgatgatgttgtaatttgtaaatcttgcta 558  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24201643 tgattttgtaaaataaggcaagaagagaaaaaatagtcttgtgggtaaaattgtaattgaaacaaatgagtgatgatgttgtaatttgtaaatcttgcta 24201742  T
Q  559 ttgaactagggctgtaagttctgaacccaaccacaccttcgctcgctgttaagtgcagtcagttcaaactcgaattcttcagcatctgaacccaaacacc 658  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24201743 ttgaactagggctgtaagttctgaacccaaccacaccttcgctcgctgttaagtgcagtcagttcaaactcgaattcttcagcatctgaacccaaacacc 24201842  T
Q  659 gttcagaatcagaacctatccatttccaatcgcttattcatctcaattctccaattcatgacataaacgcttctctcgaattcgccatcgcaatctcacc 758  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24201843 gttcagaatcagaacctatccatttccaatcgcttattcatctcaattctccaattcatgacataaacgcttctctcgaattcgccatcgcaatcttacc 24201942  T
Q  759 ctcacactcttctctccgttcggaatctctcgccgttagaagatgtcag 807  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24201943 ctcacactcttctctccgttcggaatctctcgccgttagaagatgtcag 24201991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 250
Target Start/End: Complemental strand, 39310492 - 39310404
Alignment:
Q  162 taatctcaacccttggttttgtttttgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaag 250  Q
    |||||||| || |||||||| ||||| |||||||||| |||||||||   || || || |||||| |||| ||||||||||||||||||    
T  39310492 taatctcagccattggttttattttttccacatgtcatacatctataacttgaaatgggataaattgaggaatcttaaatggagcaaag 39310404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 9482746 - 9482685
Alignment:
Q  169 aacccttggttttgtttttgccacatgtcaaacatctatacaatggaaaggaataaatggag 230  Q
    |||||||| ||||||||||||||| ||||| ||||||||  |||| ||||| ||||||||||    
T  9482746 aacccttgattttgtttttgccacttgtcacacatctatgaaatgaaaagggataaatggag 9482685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 259
Target Start/End: Original strand, 31414820 - 31414917
Alignment:
Q  162 taatctcaacccttggttttgtttttgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaagttgaactcc 259  Q
    ||||||||||||||  ||||   |||||||||||||| | ||| ||| | || |||||||||||| |||| | |||||||||||||||| || |||||    
T  31414820 taatctcaacccttctttttacatttgccacatgtcacatatcaataaagtgaaaaggaataaattgaggaaacttaaatggagcaaagatggactcc 31414917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 27340751 - 27340824
Alignment:
Q  185 tttgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaagttgaactc 258  Q
    ||||||||||||||   ||| || || ||||||||| |||||||||| ||  |||||||||||||| |||||||    
T  27340751 tttgccacatgtcatttatccatgcattggaaaggagtaaatggaggaatactaaatggagcaaagatgaactc 27340824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 9e-23; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 155 - 258
Target Start/End: Complemental strand, 10991281 - 10991180
Alignment:
Q  155 caacttgtaatctcaacccttggttttgtttttgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaagttga 254  Q
    |||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||| ||||| ||| |    ||||||||||||||||||    
T  10991281 caacttgtaatctcaacccttgattttctttttgccacatgtcaaa-atctatacaatggaaaggagtaaat-gagtccgagtaaatggagcaaagttga 10991184  T
Q  255 actc 258  Q
    ||||    
T  10991183 actc 10991180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 258
Target Start/End: Complemental strand, 40613134 - 40613055
Alignment:
Q  179 tttgtttttgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaagttgaactc 258  Q
    ||||||||| ||||||||||||||||||| || |  |||||| |||||||||  |  ||||||||||||||| |||||||    
T  40613134 tttgttttttccacatgtcaaacatctatgcattcaaaaggattaaatggagtaaggttaaatggagcaaagatgaactc 40613055  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 187 - 262
Target Start/End: Original strand, 40613797 - 40613872
Alignment:
Q  187 tgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaagttgaactcccct 262  Q
    |||||||||||| ||||||| | |||| | ||| |||||||||||| |  |||||||||||||| |||||||||||    
T  40613797 tgccacatgtcagacatctacaaaatgaacagggataaatggaggcttgctaaatggagcaaagatgaactcccct 40613872  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 258
Target Start/End: Original strand, 10991842 - 10991938
Alignment:
Q  162 taatctcaacccttggttttgtttttgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaagttgaactc 258  Q
    |||| ||| ||||| | ||| |||||||||||||||| ||||||||||| ||||||||| ||| | |||  |  |||||||||| |||||| |||||    
T  10991842 taatttcatcccttagatttatttttgccacatgtcacacatctatacattggaaaggagtaacttgagcaaagttaaatggagtaaagtttaactc 10991938  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 34936799 - 34936723
Alignment:
Q  174 ttggttttgtttttgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaag 250  Q
    |||||||| |||||||||||||||| | ||||||  | || ||||| ||||||||||| ||  ||||||||||||||    
T  34936799 ttggttttatttttgccacatgtcacaaatctatgaagtgaaaagggataaatggaggtatggtaaatggagcaaag 34936723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 52103508 - 52103564
Alignment:
Q  202 atctatacaatggaaaggaataaatggaggcatcttaaatggagcaaagttgaactc 258  Q
    |||||| || ||||||||| |||||||||| || ||||||||||||||| |||||||    
T  52103508 atctatgcattggaaaggagtaaatggaggaatgttaaatggagcaaagatgaactc 52103564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 34329454 - 34329409
Alignment:
Q  162 taatctcaacccttggttttgtttttgccacatgtcaaacatctat 207  Q
    |||||||||||||||  ||||||||||||||||| || ||||||||    
T  34329454 taatctcaacccttgaatttgtttttgccacatgacatacatctat 34329409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 34330090 - 34330135
Alignment:
Q  162 taatctcaacccttggttttgtttttgccacatgtcaaacatctat 207  Q
    |||||||||||||||  ||||| |||||||||||||| ||||||||    
T  34330090 taatctcaacccttgaatttgtctttgccacatgtcatacatctat 34330135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 155 - 252
Target Start/End: Original strand, 16871297 - 16871394
Alignment:
Q  155 caacttgtaatctcaacccttggttttgtttttgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaagtt 252  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||| ||  | |  | |||   ||||||||||||||||||||||| ||||||    
T  16871297 caacatgtaatctcaacccttggttttgtttttgccacatgtcagacatcaatgtattaaataggtggaaatggaggcatcttaaatggagtaaagtt 16871394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 250
Target Start/End: Complemental strand, 41889420 - 41889331
Alignment:
Q  162 taatctcaacccttggttttg-tttttgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaag 250  Q
    |||||||| |||||| ||||  |||||||||||||||| ||||| | ||| || |||||| ||||||||| | ||||||||||| |||||    
T  41889420 taatctcagcccttgattttcatttttgccacatgtcacacatccaaacagtgaaaaggagtaaatggagccttcttaaatggaacaaag 41889331  T

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Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 162 - 258
Target Start/End: Original strand, 25675719 - 25675815
Alignment:
Q  162 taatctcaacccttggttttgtttttgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaagttgaactc 258  Q
    ||||||||||| |||  ||| ||||| |||||||||| ||||||||||| || |||||| ||||||||| || | |||||||||||||| |||||||    
T  25675719 taatctcaaccattgaatttatttttaccacatgtcacacatctatacattgaaaaggagtaaatggagccaacataaatggagcaaagatgaactc 25675815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 259
Target Start/End: Complemental strand, 18947382 - 18947285
Alignment:
Q  162 taatctcaacccttggttttgtttttgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaagttgaactcc 259  Q
    ||||||||||| |||||||| | ||||||||||||| |||||||||  | || || || ||||||||||||  | |||||||||||||| || |||||    
T  18947382 taatctcaaccattggttttatatttgccacatgtccaacatctatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcactcc 18947285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 46295627 - 46295688
Alignment:
Q  169 aacccttggttttgtttttgccacatgtcaaacatctatacaatggaaaggaataaatggag 230  Q
    |||| ||| ||||||||| ||||||||||| ||||||||| |||| ||||| ||||||||||    
T  46295627 aacctttgattttgttttagccacatgtcacacatctataaaatgaaaagggataaatggag 46295688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 258
Target Start/End: Original strand, 33361748 - 33361851
Alignment:
Q  155 caacttgtaatctcaacccttggttttgtttttgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaagttga 254  Q
    |||||| |||||||| || |||| |||||||||||||||||||| ||||| || || || |  || |||||||||| |||| |||||||||||||||||     
T  33361748 caacttttaatctcatcctttgggtttgtttttgccacatgtcatacatcaatgcactgaactggtataaatggagtcatcctaaatggagcaaagttgc 33361847  T
Q  255 actc 258  Q
    ||||    
T  33361848 actc 33361851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 259
Target Start/End: Complemental strand, 4854569 - 4854472
Alignment:
Q  162 taatctcaacccttggttttgtttttgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaagttgaactcc 259  Q
    ||||||||||| |||  ||| ||||| ||| |||||| ||||||||||| || |||||| ||||||||| || | |||||||||||||| ||||||||    
T  4854569 taatctcaaccattgaatttatttttaccatatgtcacacatctatacattgaaaaggagtaaatggagtcaacataaatggagcaaagatgaactcc 4854472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 155 - 259
Target Start/End: Complemental strand, 20268225 - 20268121
Alignment:
Q  155 caacttgtaatctcaacccttggttttgtttttgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaagttga 254  Q
    |||||| ||||||||  | |||| |||||||||||||||||||| ||||| || || || |  || |||||||||| |||| |||||||||||||||||     
T  20268225 caacttttaatctcatactttgggtttgtttttgccacatgtcatacatcgatgcactgaactggtataaatggagtcatcctaaatggagcaaagttgc 20268126  T
Q  255 actcc 259  Q
    |||||    
T  20268125 actcc 20268121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 258
Target Start/End: Original strand, 20267998 - 20268101
Alignment:
Q  155 caacttgtaatctcaacccttggttttgtttttgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaagttga 254  Q
    |||||| ||||||||  | |||| |||||||||||||||||||| ||||| || || || |  || |||||||||| |||| |||||||||||||||||     
T  20267998 caacttttaatctcattctttgggtttgtttttgccacatgtcatacatcgatgcactgaactggtataaatggagtcatcctaaatggagcaaagttgc 20268097  T
Q  255 actc 258  Q
    ||||    
T  20268098 actc 20268101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 10147882 - 10147784
Alignment:
Q  162 taatctcaacccttggttttgtttttgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaagttgaactccc 260  Q
    |||||||||| |||| |||| |||||||||||||||| ||||| |   |||| || || |||||||||||| || ||| |||||  |||||||||||||    
T  10147882 taatctcaacgcttgattttatttttgccacatgtcacacatccaacgaatgaaatgggataaatggaggcttcctaactggagtgaagttgaactccc 10147784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 39064584 - 39064649
Alignment:
Q  185 tttgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaag 250  Q
    |||||||||||||| ||||| ||| |||| |||||||||||| |||| | | ||||||||||||||    
T  39064584 tttgccacatgtcacacatcaataaaatgaaaaggaataaattgaggaaacataaatggagcaaag 39064649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 258
Target Start/End: Original strand, 10148586 - 10148682
Alignment:
Q  162 taatctcaacccttggttttgtttttgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaagttgaactc 258  Q
    ||||||||||||||| |||| ||||| |||||||||| ||||| |   |||| || ||  ||||||||||| || |||||||||  |||||||||||    
T  10148586 taatctcaacccttgattttatttttaccacatgtcacacatccaaggaatgaaatggggtaaatggaggcttcctaaatggagtgaagttgaactc 10148682  T

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Target: scaffold0098 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 52360 - 52262
Alignment:
Q  162 taatctcaacccttggttttgtttttgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaagttgaactccc 260  Q
    ||||||||||| |||| |||||||||  ||||||||| |||||||| || || |||||| |||||||||| | |  ||||||||||||| |||||||||    
T  52360 taatctcaaccattggatttgtttttaacacatgtcacacatctatgcattgaaaaggagtaaatggaggaaacaaaaatggagcaaagatgaactccc 52262  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 156 - 258
Target Start/End: Original strand, 30430391 - 30430493
Alignment:
Q  156 aacttgtaatctcaacccttggttttgtttttgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaagttgaa 255  Q
    ||||| |||||| ||||||| | ||| ||||||||||||||||   |||||| || ||||||||| |||||||||| ||  |||||||||||||| ||||    
T  30430391 aacttttaatcttaaccctttgatttatttttgccacatgtcatttatctatgcattggaaaggagtaaatggaggaatactaaatggagcaaagatgaa 30430490  T
Q  256 ctc 258  Q
    |||    
T  30430491 ctc 30430493  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 15668273 - 15668340
Alignment:
Q  183 tttttgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaag 250  Q
    |||||||||||||||| ||||| | ||| || |||||| ||||||||| | |||||||||||||||||    
T  15668273 tttttgccacatgtcacacatccaaacagtgaaaaggagtaaatggagccttcttaaatggagcaaag 15668340  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 250
Target Start/End: Original strand, 19778734 - 19778822
Alignment:
Q  162 taatctcaacccttggttttgtttttgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaag 250  Q
    ||||||||||||||  ||||   |||||||||||||||||||| ||| | |  ||||||||||| |||||| |||||||||||| ||||    
T  19778734 taatctcaacccttatttttacatttgccacatgtcaaacatcaataaagtaaaaaggaataaacggaggcttcttaaatggaggaaag 19778822  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 258
Target Start/End: Original strand, 43379457 - 43379553
Alignment:
Q  162 taatctcaacccttggttttgtttttgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaagttgaactc 258  Q
    ||||| ||||||||| |||| |||||||||||||||| |||||||     ||||| || |||||||||| | || |||||||||||||| |||||||    
T  43379457 taatcccaacccttgcttttatttttgccacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactc 43379553  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 259
Target Start/End: Original strand, 3636368 - 3636465
Alignment:
Q  162 taatctcaacccttggttttgtttttgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaagttgaactcc 259  Q
    ||||||||||||||  ||||  |||| ||||||||||  |||||||    || ||||| | |||||||| | ||||||||||||||||| ||||||||    
T  3636368 taatctcaacccttaattttaatttttccacatgtcagtcatctatgagttgaaaagggaaaaatggagccttcttaaatggagcaaagatgaactcc 3636465  T

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Target: scaffold0330 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 258
Target Start/End: Complemental strand, 12613 - 12517
Alignment:
Q  162 taatctcaacccttggttttgtttttgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaagttgaactc 258  Q
    ||||| ||||||||| ||||   |||||||||||||| ||| | ||| | || |||||||||||| |||| | ||||||| |||||||| |||||||    
T  12613 taatcccaacccttgtttttacatttgccacatgtcacacaacaataaagtgaaaaggaataaattgaggaaacttaaatagagcaaagatgaactc 12517  T

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Target: scaffold0330; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 13237 - 13302
Alignment:
Q  185 tttgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaag 250  Q
    |||||||||||||| ||||| ||| | || |||||||||||| |||| | | ||||||||||||||    
T  13237 tttgccacatgtcacacatcaataaagtgaaaaggaataaattgaggaaacctaaatggagcaaag 13302  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 18065803 - 18065718
Alignment:
Q  174 ttggttttgtttttgccacatgtcaaacatctatacaatggaaaggaataaatggaggcatcttaaatggagcaaagttgaactcc 259  Q
    |||||||| |||||||||||||||| | ||||||| | |  ||||| |||||||||||  |  |||||||||||||| || |||||    
T  18065803 ttggttttatttttgccacatgtcatatatctataaagtaaaaagggataaatggaggtttggtaaatggagcaaagatgcactcc 18065718  T

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