View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11940_high_31 (Length: 399)

Name: NF11940_high_31
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11940_high_31
NF11940_high_31
[»] chr2 (1 HSPs)
chr2 (14-399)||(33637672-33638054)
[»] chr4 (3 HSPs)
chr4 (24-399)||(13784381-13784753)
chr4 (353-397)||(10553569-10553613)
chr4 (353-397)||(10571299-10571343)
[»] scaffold0128 (2 HSPs)
scaffold0128 (24-399)||(34044-34416)
scaffold0128 (24-195)||(29236-29404)
[»] chr8 (6 HSPs)
chr8 (17-282)||(29124533-29124798)
chr8 (50-333)||(31669440-31669720)
chr8 (297-399)||(40794193-40794295)
chr8 (297-398)||(29124849-29124953)
chr8 (350-399)||(29126468-29126517)
chr8 (130-215)||(40794307-40794392)
[»] chr3 (1 HSPs)
chr3 (34-399)||(3837593-3837958)
[»] scaffold0267 (1 HSPs)
scaffold0267 (34-399)||(13074-13439)
[»] chr7 (2 HSPs)
chr7 (32-399)||(20475991-20476358)
chr7 (344-396)||(15571919-15571971)


Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 399
Target Start/End: Complemental strand, 33638054 - 33637672
Alignment:
Q  14 cacagaaatgggaggggagggttcattgcatgggagatagttgttggagaaagactattgcttgccctgattttccaattctacttggaggcactctcgt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33638054 cacagaaatgggaggggagggttcattgcatgggagatagttgttggagaaagactattgcttgccctgattttccaattctacttggaggcactctcgt 33637955  T
Q  114 tggaccatccgtgaatggtagtgttaattggttagcacgtcacaacataaattgtcatatgtataaatggaaaaatgttaccatcaaccaattagtgatt 213  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33637954 tggacaattcgtgaatggtagtgttaattggttagcacgtcacaacataaattgtcatatgtataaatggaaaaatgttaccatcaaccaattagtgatt 33637855  T
Q  214 ttatcgtttgatatgcggatggaggcgtgtaagtatatgatgttacctgatggttttgttgaagtgcccaaagatgaaccaactcttgttgttttgaggg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || ||||||||||||||||||||||||||||||||||    
T  33637854 ttatcgtttgatatgcggatggaggcgtgtaagtatatgatgttacctgatggttttgtt---gtacccaaagatgaaccaactcttgttgttttgaggg 33637758  T
Q  314 atcgtttgtgcctttattatgtccacatgagaacctattttgttttgtgggaaatgagagagtttggagttcaagagtcttggact 399  Q
    ||||| ||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||    
T  33637757 atcgtctgtgcctttattatgtccacatgagaacccatcttgttttgtgagaaatgagagagtttggagttcaagagtcttggact 33637672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 24 - 399
Target Start/End: Complemental strand, 13784753 - 13784381
Alignment:
Q  24 ggaggggagggttcattgcatgggagatagttgttggagaaagactattgcttgccctgattttccaattctacttggaggcactctcgttggaccatcc 123  Q
    ||||||||| |||||||| ||||| ||||||||||||||||||||||| | |||||||  |||||||||||||||  ||   |||  |  |||||||| |    
T  13784753 ggaggggagagttcattgtatgggtgatagttgttggagaaagactatcgattgccctacttttccaattctactacga---acttccaatggaccattc 13784657  T
Q  124 gtgaatggtagtgttaattggttagcacgtcacaacataaattgtcatatgtataaatggaaaaatgttaccatcaaccaattagtgattttatcgtttg 223  Q
    ||||||||||||||||| |||||||||| ||||||| ||||  || ||   ||||||||| ||||| |||| ||| | ||||||||| |||| ||  |||    
T  13784656 gtgaatggtagtgttaactggttagcacttcacaacttaaacagtgatgattataaatgggaaaatattactatccaacaattagtggttttttcacttg 13784557  T
Q  224 atatgcggatggaggcgtgtaagtatatgatgttacctgatggttttgttgaagtgcccaaagatgaaccaactcttgttgttttgagggatcgtttgtg 323  Q
    || |||||| ||||   |||||||||||  || | ||||||||||||| ||| |||||| ||||||||||| |||||| ||||||||||| |||  | ||    
T  13784556 atctgcggaaggagaaatgtaagtatattttgctgcctgatggttttggtgaggtgccccaagatgaaccagctcttgctgttttgaggggtcgcctctg 13784457  T
Q  324 cctttattatgtccacatgagaacctattttgttttgtgggaaatgagagagtttggagttcaagagtcttggact 399  Q
    |||||||||||  || ||||||||  ||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  13784456 cctttattatgatcaaatgagaacacattttgttttgtgggaaatgagagagtatggagttcaagaatcttggact 13784381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 397
Target Start/End: Complemental strand, 10553613 - 10553569
Alignment:
Q  353 ttgttttgtgggaaatgagagagtttggagttcaagagtcttgga 397  Q
    ||||||| ||| |||||| ||| ||||||||||||||||||||||    
T  10553613 ttgttttatggaaaatgacagattttggagttcaagagtcttgga 10553569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 397
Target Start/End: Complemental strand, 10571343 - 10571299
Alignment:
Q  353 ttgttttgtgggaaatgagagagtttggagttcaagagtcttgga 397  Q
    ||||||| ||| |||||| ||| ||||||||||||||||||||||    
T  10571343 ttgttttatggaaaatgacagattttggagttcaagagtcttgga 10571299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 24 - 399
Target Start/End: Complemental strand, 34416 - 34044
Alignment:
Q  24 ggaggggagggttcattgcatgggagatagttgttggagaaagactattgcttgccctgattttccaattctacttggaggcactctcgttggaccatcc 123  Q
    ||||||||| ||||| || ||||| ||||||||||||||||||||| | | |||||||  |||||||||||||||  ||   | |  |  |||||||| |    
T  34416 ggaggggagagttcactgtatgggtgatagttgttggagaaagactctcgattgccctacttttccaattctactacga---atttccaatggaccattc 34320  T
Q  124 gtgaatggtagtgttaattggttagcacgtcacaacataaattgtcatatgtataaatggaaaaatgttaccatcaaccaattagtgattttatcgtttg 223  Q
    |||||||| |||||||| |||||||||| ||||||| ||||  || ||   ||||||||| |||||||||||||| | ||||||||| |||| ||  |||    
T  34319 gtgaatggcagtgttaactggttagcacttcacaacttaaacagtgatgattataaatgggaaaatgttaccatccaacaattagtggttttttcacttg 34220  T
Q  224 atatgcggatggaggcgtgtaagtatatgatgttacctgatggttttgttgaagtgcccaaagatgaaccaactcttgttgttttgagggatcgtttgtg 323  Q
    || |||||| |||| | |||||||||||  |||| ||   |||||||| |||  ||||| ||||||||||| |||||| ||||||||||| |||  | ||    
T  34219 atctgcggaaggagacatgtaagtatattttgttgcccattggttttggtgagctgcccgaagatgaaccagctcttgctgttttgaggggtcgcctctg 34120  T
Q  324 cctttattatgtccacatgagaacctattttgttttgtgggaaatgagagagtttggagttcaagagtcttggact 399  Q
    |||||||||||  || ||||||||  ||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  34119 cctttattatgatcatatgagaacacattttgttttgtgggaaatgagagagtatggagttcaagaatcttggact 34044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 24 - 195
Target Start/End: Complemental strand, 29404 - 29236
Alignment:
Q  24 ggaggggagggttcattgcatgggagatagttgttggagaaagactattgcttgccctgattttccaattctacttggaggcactctcgttggaccatcc 123  Q
    ||||||||| |||||||| ||| | |||||||||||||||||||||   | |||||||  |||||||||||||||  ||   |||  |  |||||||| |    
T  29404 ggaggggagagttcattgtatgagtgatagttgttggagaaagactcccgattgccctacttttccaattctactacga---acttgcaatggaccattc 29308  T
Q  124 gtgaatggtagtgttaattggttagcacgtcacaacataaattgtcatatgtataaatggaaaaatgttacc 195  Q
    ||||||||||||||||| |||||||||| ||| ||| |||| ||| |||  ||||||||| |||||||||||    
T  29307 gtgaatggtagtgttaactggttagcacttcaaaacgtaaactgtgataattataaatgggaaaatgttacc 29236  T

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Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 29124533 - 29124798
Alignment:
Q  17 agaaatgggaggggagggttcattgcatgggagatagttgttggagaaagactattgcttgccctgattttccaattctacttggaggcactctcgttgg 116  Q
    |||||||||| ||||| |||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||    ||||||||| |||||    
T  29124533 agaaatgggaagggagagttcattgcatgggtgaaagttgttggagaaagactcttgcttgccctgattttccaattctaccaaaaggcactcttgttgg 29124632  T
Q  117 accatccgtgaatggtagtgttaattggttagcacgtcacaacataaattgtcatatgtataaatggaaaaatgttaccatcaaccaattagtgatttta 216  Q
    ||||| ||||||||||||| |||| | |||||||||||| | | |||||||||||||| || ||| |||||||||||   || | || ||| | ||||||    
T  29124633 accattcgtgaatggtagtattaactagttagcacgtcatagcttaaattgtcatatgaatgaattgaaaaatgttattgtcgatcagttaataatttta 29124732  T
Q  217 tcgtttgatatgcggatggaggcgtgtaagtatatgatgttacctgatggttttgttgaagtgccc 282  Q
    ||  ||||||||||| ||||||| |||||||||||| ||||  || |||||||| ||||| |||||    
T  29124733 tcacttgatatgcggctggaggcatgtaagtatatgttgttgtctaatggttttattgaaatgccc 29124798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 50 - 333
Target Start/End: Original strand, 31669440 - 31669720
Alignment:
Q  50 atagttgttggagaaagactattgcttgccctgattttccaattctacttggaggcactctcgttggaccatccgtgaatggtagtgttaattggttagc 149  Q
    |||| ||||||||||||||| ||||||||||||||||||||||| ||||   || | || | |||||||||| ||||||||||||| |||| | ||||||    
T  31669440 atagatgttggagaaagacttttgcttgccctgattttccaattttactaaaagacgcttttgttggaccattcgtgaatggtagtattaacttgttagc 31669539  T
Q  150 acgtcacaacataaattgtcatatgtataaatggaaaaatgttaccatcaaccaattagtgattttatcgtttgatatgcggatggaggcgtgtaagtat 249  Q
    || ||| | | ||||||  |||||| || |||   ||||||||| | || |||| ||||| ||||||||| ||||||||  |||| || | | |||||||    
T  31669540 acatcatagcttaaatttccatatgaatgaatttcaaaatgttatcgtcgaccacttagtaattttatcgcttgatatgaagatgaagacatataagtat 31669639  T
Q  250 atgatgttacctgatggttttgttgaagtgcccaaagatgaaccaactcttgttgttttgagggatcgtttgtgcctttattat 333  Q
    ||| ||   ||| |||||||||||||| ||||| || |||  |||| ||||| |||||| |||  |||  ||||||||||||||    
T  31669640 atgctg---cctaatggttttgttgaaatgccccaaaatgggccaaatcttgatgttttaaggagtcgcatgtgcctttattat 31669720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 297 - 399
Target Start/End: Complemental strand, 40794295 - 40794193
Alignment:
Q  297 tcttgttgttttgagggatcgtttgtgcctttattatgtccacatgagaacctattttgttttgtgggaaatgagagagtttggagttcaagagtcttgg 396  Q
    ||||| ||||||||||| |||  | |||||||||||||   ||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||    
T  40794295 tcttgctgttttgaggggtcgcctttgcctttattatgattacatgagaacacattttgttttgtgggaaatgagagagtttggagttcaagaatcttgg 40794196  T
Q  397 act 399  Q
    |||    
T  40794195 act 40794193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 297 - 398
Target Start/End: Original strand, 29124849 - 29124953
Alignment:
Q  297 tcttgttgttttgagggatcgtttgtgcctttattat---gtccacatgagaacctattttgttttgtgggaaatgagagagtttggagttcaagagtct 393  Q
    ||||| ||||||||||| ||| |||||||||||||||   | ||| ||||||||| ||||   |||||||| ||||||||||||||||||||||||||||    
T  29124849 tcttgctgttttgaggggtcgattgtgcctttattattatgaccagatgagaacccatttcactttgtggggaatgagagagtttggagttcaagagtct 29124948  T
Q  394 tggac 398  Q
    |||||    
T  29124949 tggac 29124953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 399
Target Start/End: Original strand, 29126468 - 29126517
Alignment:
Q  350 attttgttttgtgggaaatgagagagtttggagttcaagagtcttggact 399  Q
    ||||| ||||| | ||||||||||||||||||||| ||||||||||||||    
T  29126468 attttattttgggtgaaatgagagagtttggagtttaagagtcttggact 29126517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 40794392 - 40794307
Alignment:
Q  130 ggtagtgttaattggttagcacgtcacaacataaattgtcatatgtataaatggaaaaatgttaccatcaaccaattagtgatttt 215  Q
    ||||||||||| | |||||||| ||||||| ||||  || ||   ||||||||| |||||||||||||| | ||||||||| ||||    
T  40794392 ggtagtgttaactagttagcacttcacaacttaaacagtaatgattataaatgggaaaatgttaccatccaacaattagtggtttt 40794307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 34 - 399
Target Start/End: Original strand, 3837593 - 3837958
Alignment:
Q  34 gttcattgcatgggagatagttgttggagaaagactattgcttgccctgattttccaattctacttggaggcactctcgttggaccatccgtgaatggta 133  Q
    |||||||||||||| ||||||| ||||||||| ||| ||||||||| ||||||||||||| ||||   | | ||| |||||||||||| |||||||||||    
T  3837593 gttcattgcatgggcgatagttcttggagaaatactcttgcttgccatgattttccaattttactacaaaggactatcgttggaccattcgtgaatggta 3837692  T
Q  134 gtgttaattggttagcacgtcacaacataaattgtcatatgtataaatggaaaaatgttaccatcaaccaattagtgattttatcgtttgatatgcggat 233  Q
    ||||||| |||||| |   ||| ||| ||||||||||| ||||| || || ||||||||||||||||||| ||| ||||||| ||| ||||| |||| |     
T  3837693 gtgttaactggttaacgtatcataacttaaattgtcatttgtatgaaagggaaaatgttaccatcaaccagttattgattttttcgcttgatttgcgaaa 3837792  T
Q  234 ggaggcgtgtaagtatatgatgttacctgatggttttgttgaagtgcccaaagatgaaccaactcttgttgttttgagggatcgtttgtgcctttattat 333  Q
    |||||| |||||||||||  |||| || |||| |      | |||| || |||||  |  ||  |||| ||||||||| | | | |||||  ||||||||    
T  3837793 ggaggcatgtaagtatattttgttgccagatgctacaaccgtagtgtcccaagatctattaaaacttgctgttttgagaggttgcttgtgtttttattat 3837892  T
Q  334 gtccacatgagaacctattttgttttgtgggaaatgagagagtttggagttcaagagtcttggact 399  Q
      ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3837893 aaccacatgagaacccattttgttttgtgggaaatgaaagagtttggagttcaagagtcttggact 3837958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 34 - 399
Target Start/End: Original strand, 13074 - 13439
Alignment:
Q  34 gttcattgcatgggagatagttgttggagaaagactattgcttgccctgattttccaattctacttggaggcactctcgttggaccatccgtgaatggta 133  Q
    |||||||||||||| ||||||| ||||||||| ||| ||||||||| ||||||||||||| ||||   | | ||| ||||||||||||   |||||||||    
T  13074 gttcattgcatgggcgatagttcttggagaaatactcttgcttgccatgattttccaattttactacaaaggactatcgttggaccatttctgaatggta 13173  T
Q  134 gtgttaattggttagcacgtcacaacataaattgtcatatgtataaatggaaaaatgttaccatcaaccaattagtgattttatcgtttgatatgcggat 233  Q
    ||||||| |||||| |   ||| ||| ||||||||||| ||||| || || ||||||||||||| ||||| ||| ||||||| ||| ||||| |||| |     
T  13174 gtgttaactggttaacgtatcataacttaaattgtcatttgtatgaaagggaaaatgttaccattaaccagttattgattttttcgcttgatttgcgaaa 13273  T
Q  234 ggaggcgtgtaagtatatgatgttacctgatggttttgttgaagtgcccaaagatgaaccaactcttgttgttttgagggatcgtttgtgcctttattat 333  Q
    |||| | |||||||||||  |||| || ||| ||      | |||| || |||||  || ||  |||| ||||||||||| | | |||||  ||||||||    
T  13274 ggagacatgtaagtatattttgttgccagatagtacaaccgtagtgtcccaagatctactaaaacttgctgttttgaggggttgcttgtgtttttattat 13373  T
Q  334 gtccacatgagaacctattttgttttgtgggaaatgagagagtttggagttcaagagtcttggact 399  Q
      ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13374 aaccacatgagaacccattttgttttgtgggaaatgaaagagtttggagttcaagagtcttggact 13439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 32 - 399
Target Start/End: Complemental strand, 20476358 - 20475991
Alignment:
Q  32 gggttcattgcatgggagatagttgttggagaaagactattgcttgccctgattttccaattctacttggaggcactctcgttggaccatccgtgaatgg 131  Q
    |||||||||||||||| |||| ||||||||| |||| ||| | ||||||   ||||||||||||||| |    || ||   ||||| |||  |||| |||    
T  20476358 gggttcattgcatgggtgataattgttggaggaagattatagtttgccccacttttccaattctactggattacaatcagattggatcatttgtgagtgg 20476259  T
Q  132 tagtgttaattggttagcacgtcacaacataaattgtcatatgtataaatggaaaaatgttaccatcaaccaattagtgattttatcgtttgatatgcgg 231  Q
    || |||||| |||||||||   ||||||  ||| | ||||   ||| ||||| |||||||||||||||| || ||||  ||||| ||  ||||| | |      
T  20476258 taatgttaactggttagcattgcacaactcaaaatttcatgaatatgaatgggaaaatgttaccatcaatcagttagctattttttcacttgatctacaa 20476159  T
Q  232 atggaggcgtgtaagtatatgatgttacctgatggttttgttgaagtgcccaaagatgaaccaactcttgttgttttgagggatcgtttgtgcctttatt 331  Q
    | |||| | || ||||||| | |||| ||||||||||||  |||| | ||| ||||||||||||  |||  |||||||||||   |  | ||| ||||||    
T  20476158 aaggagacatgcaagtatacgttgttgcctgatggttttagtgaacttcccgaagatgaaccaaggcttactgttttgaggggctgcctatgcttttatt 20476059  T
Q  332 atgtccacatgagaacctattttgttttgtgggaaatgagagagtttggagttcaagagtcttggact 399  Q
    |||   | ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20476058 atgattatatgagaacccattttgttttgtgggaaatgagagagtttggggttcaagagtcttggact 20475991  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 15571971 - 15571919
Alignment:
Q  344 gaacctattttgttttgtgggaaatgagagagtttggagttcaagagtcttgg 396  Q
    ||||| |||||||  ||||| ||||||| |||||||||||| |||||||||||    
T  15571971 gaacccattttgtcatgtggcaaatgagggagtttggagttgaagagtcttgg 15571919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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