View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_high_32 (Length: 373)
Name: NF11940_high_32
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 225 - 341
Target Start/End: Complemental strand, 31013511 - 31013395
Alignment:
| Q |
225 |
cttttaatcattaaagtttatattaattaaccttgttggctattaaattacatttgtaaatggtagatttgtaactcataatatatattggatcatcttc |
324 |
Q |
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| T |
31013511 |
cttttaatcattaaattttatattaattaaccttgttggctattaaattacatttgtaaatggtagatttgtaactcataatatatattggatcatcttc |
31013412 |
T |
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| Q |
325 |
atgaatttctataactg |
341 |
Q |
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| T |
31013411 |
atgaatttctataactg |
31013395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 31013715 - 31013617
Alignment:
| Q |
19 |
aagccatcattgatcatagagatcttaatcttgaaagtttcttcaagtttctctttggtgataataatcctcctcttttaccatccactgaggtaatcc |
117 |
Q |
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| T |
31013715 |
aagccatcattgatcatagagatcttaatcttgaaagtttcttcaagtttctctttggtgataataatcctcctcttttaccttccactgaggtaatcc |
31013617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 31707686 - 31707762
Alignment:
| Q |
41 |
tcttaatcttgaaagtttcttcaagtttctctttggtgataataatcctcctcttttaccatccactgaggtaatcc |
117 |
Q |
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| T |
31707686 |
tcttaatcttgaaagtttcttcaagtttctcttcggtgatactaatcctcctcttttaccttccactggggtaatcc |
31707762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 245 - 341
Target Start/End: Original strand, 31707873 - 31707969
Alignment:
| Q |
245 |
tattaattaaccttgttggctattaaattacatttgtaaatggtagatt-tgtaactcataatatatattggatcatcttcatgaatttctataactg |
341 |
Q |
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| T |
31707873 |
tattaattaaccttgttggctattaaattaaatttataaatggtagattgtgttactcatgata-atattgggttatcatcatgaacttctataactg |
31707969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 35548705 - 35548763
Alignment:
| Q |
42 |
cttaatcttgaaagtttcttcaagtttctctttggtgataataatcctcctcttttacc |
100 |
Q |
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| T |
35548705 |
cttaatcttgaaacttttttcaagtttctctttagtgatagtaaccttgctcttttacc |
35548763 |
T |
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