View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11940_high_35 (Length: 354)
Name: NF11940_high_35
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_high_35 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 95 - 351
Target Start/End: Complemental strand, 245298 - 245042
Alignment:
| Q |
95 |
agtttcgtaaatacactttttattaaacttcattttttaaacgtacattaggataaatgttagctcnnnnnnnnnnnnnnnnnnnnnnngacaaaataaa |
194 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
245298 |
agtttcgtaaatatactttttattaaacttcatttttcaaacgtacattaggataaatgttagctctttgttttttatttttctgttttgacaaaataaa |
245199 |
T |
|
| Q |
195 |
tttgagttcttttagaacaggtaaaaaatgtgttttctctaacataatttatgtttcatactattatgtagctcatttttatcgcaacaagctttccata |
294 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
245198 |
tctgagttcttttagaacaggtaaaaaatgtgttttctctaacataatttatgtttcatactatcatgtagctcatttttatcgcaacaagctttccata |
245099 |
T |
|
| Q |
295 |
tagaattaaatccaattcaattgtcaaaatgctaaatgataaatatatagttcctcc |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
245098 |
tagaattaaatccaattcaattgtcaaaatgctaaatgataaatatatagttcctcc |
245042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University