View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_high_37 (Length: 339)
Name: NF11940_high_37
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 12312640 - 12312346
Alignment:
| Q |
19 |
ataaggtgatgacaagaaataatatagggtttttggtcatgatttagtatcatcgtggcatagaagtaggtattttatgtttgttttagtttagttttgt |
118 |
Q |
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| T |
12312640 |
ataaggtgatgacaagaaataatatagggtttttggtcatgatttagtatcattgtggcatagaagcaggtattttatgtttgttttagtttagttttgt |
12312541 |
T |
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| Q |
119 |
aaataaatttctcaaaaagtaatgaaagaacaaagaagggaaaaatccttaaagccatggaaattcacctaaaccaaaaaactatgtgactgcgctatgc |
218 |
Q |
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| T |
12312540 |
aaataaatttctcaaaaagtaatgaaagaacaaagaagggaaaaatccttaaagccatggaaattcacctgaaccaaaaaactatgtgattgcgct---- |
12312445 |
T |
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| Q |
219 |
atgttttttacaagtttatcattgatgatgttagagatgtagtcgttatggacattatggtgagaaaaaatggagca--atgaacaaagaaatcaaaga |
315 |
Q |
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|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
12312444 |
atattttttacaagtttatcattgatgatgttagagacatagtcgttatggacattatggtgagaaaaaatggagcaatatgaatgaagaaatcaaaga |
12312346 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 296
Target Start/End: Original strand, 3952089 - 3952166
Alignment:
| Q |
219 |
atgttttttacaagtttatcattgatgatgttagagatgtagtcgttatggacattatggtgagaaaaaatggagcaa |
296 |
Q |
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||||||||||||||||||||| ||||||||| | | | || ||||||||||| || || |||||| ||||||||||| |
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| T |
3952089 |
atgttttttacaagtttatcaccgatgatgtttggggtataatcgttatggacgttctgatgagaagaaatggagcaa |
3952166 |
T |
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