View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_high_42 (Length: 253)
Name: NF11940_high_42
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_high_42 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 18216820 - 18216582
Alignment:
| Q |
1 |
aaaaagagaaatgaaattgaagttaaagccattgtttttaggaaggaaggaaaaagccacagaggaagaagtgacagaatgtaaactatgttgttatacc |
100 |
Q |
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| T |
18216820 |
aaaaagagaaatgaaattgaagttaaagccattgtttttaggaaggaaggaaaaagccacagaggaagaagtgacagaatgtaaactatgttattatacc |
18216721 |
T |
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| Q |
101 |
aatttgtgtgtctgnnnnnnnnnnnnnnngtggctttgataggagagttatgatgaagggaaggggacagaacatgatataaacacacatcatacacatc |
200 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18216720 |
aatttgtgtgtgt--------------ttgtggctttgataggagagttatgatgaagggaaggggacagaacatgatataaacacacatcatacacatc |
18216635 |
T |
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| Q |
201 |
aacttgcaaatattattgttattatttannnnnnnncaaaggcaaaatgaata |
253 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
18216634 |
aacttgcaaaaattattgttattatttattttttttcaaaggcaaaatgaata |
18216582 |
T |
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