View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_high_47 (Length: 239)
Name: NF11940_high_47
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_high_47 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 11055375 - 11055597
Alignment:
| Q |
1 |
atttaattttgtaaaagtcatttcatgttcacattggtgttatttgtttgtcttggtttggtttgggtttgagctagaaggttggttcaaaatccaaata |
100 |
Q |
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| T |
11055375 |
atttaattttgtaaaagtcatttcatgttcacattggtgttatttgtttgtcttggtttggtttgggtttgagctagaaggttggttcaaaatccaaata |
11055474 |
T |
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| Q |
101 |
accctagagttgtgggttaagtcgtgttttgaggttgtgattggaaacaatgtttaaattttaatcaagaaataaacacctttcttggattttcagcctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11055475 |
accctagagttgtgggttaagtcgtgttttgaggttgtgattggaaacaatgtttaaattttaatcaagaaataaacacctttcttggattttcagcctt |
11055574 |
T |
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| Q |
201 |
tgaattcgatttgaggtgctaaa |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
11055575 |
tgaattcgatttgaggtgctaaa |
11055597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 11074667 - 11074887
Alignment:
| Q |
4 |
taattttgtaaaagtcatttcatgttcacattggtgttatttgtttgtcttggtttggtttgggtttgagctagaaggttggttcaaaatccaaataacc |
103 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11074667 |
taattttgtaaaattcatttcatgttcacatttgtgttatttgtttgtcttggtttggtttgggtttgagctagaaggttggtttaaaatccaaataacc |
11074766 |
T |
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| Q |
104 |
ctagagttg-tgggttaagtcgtgttttgaggttgtgattggaaacaatgtttaaattttaatcaagaaataaacacctttcttggattttcagcctttg |
202 |
Q |
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| T |
11074767 |
ctagagttgatgggttaaatcgtgttttaaggttgtgattggaaacaatgtttaaatttcaatcaagaaataaacacctttcttgaatcttcagcctttg |
11074866 |
T |
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| Q |
203 |
aattcgatttgaggtgctaaa |
223 |
Q |
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| T |
11074867 |
aattcaatttgaggtactaaa |
11074887 |
T |
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