View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11940_high_5 (Length: 763)
Name: NF11940_high_5
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_high_5 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 701; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 701; E-Value: 0
Query Start/End: Original strand, 8 - 744
Target Start/End: Original strand, 2512911 - 2513647
Alignment:
| Q |
8 |
gagcagagataaagagccagaagatcagaagcttgaacggggcaatcttgctctgaagaacagtagcgtggtaaagaattctgttagggtgatacgaggc |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
2512911 |
gagcagtgataaagagccagaagatcagaagcttgaacggggcaatcttgctctgaagaacagtagtgtggtaaagaattctgttagggtgatacggggc |
2513010 |
T |
|
| Q |
108 |
tctgaatcgatggatggaaaaagcaagatatatgtttatgatggactttatgtagttgagtcatgttggcaggatataggaccacatgggaagctgattt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2513011 |
tctgaatcgatggatggaaaaagcaagaaatatgtttatgatggactttatgtagttgagtcatgttggcaggatataggaccacatgggaagctgattt |
2513110 |
T |
|
| Q |
208 |
ataagtttcgcttgcgaagaatcccgggacaaccagagcttgtcttcaaggaagtgaagaaatctaaaaaactcaaaacaagagaaggtctatgtgtcga |
307 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2513111 |
ataagttttgcttgcgaagaatcccgggacaaccagagctttccttcaaggaagtgaagaaatctaaaaaattcaaaacaagagaaggtctatgtgtcga |
2513210 |
T |
|
| Q |
308 |
agatatttcctacgggaaagagaaaattccaatatgtgctgtgaacaccatagataacgagaaaccccctacatttaaatacgtaaccgagatgatatat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2513211 |
agatatttcctacgggaaagagaaaattccaatatgtgctgtgaacaccatagataacgagaaaccccctacatttaaatacgtaaccgagatgatatat |
2513310 |
T |
|
| Q |
408 |
cctgaatgttgcaatcttgtccctccaaaaggatgtaattgtactaatggatgctctgaccataagaaatgttcttgtgtagtgaaaaatggtggggaga |
507 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2513311 |
cctgaatgttgcaatcttatccctccaaaaggatgtaattgtactaatggatgctctgaccataagaaatgttcttgtgtagtgaaaaatggtggggaga |
2513410 |
T |
|
| Q |
508 |
ttccatttaatcataatggggatattgtaaaagtaaagcctctagtctatgagtgtggtcctaaatgcaagtgcccttcaacctgccataacagagttag |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2513411 |
ttccatttaatcataatggggatattgtaaaagtaaagcctctagtctatgagtgtggtcctaaatgcaagtgcccttcaacctgccataacagagttag |
2513510 |
T |
|
| Q |
608 |
ccaacttggcataaatattcaactcgaaatttttaaaaccaattcaatgggatggggtgtgagatccttaaattccatcccttcaggaagttttatctgt |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2513511 |
ccaacttggcataaatattcaactcgaaatttttaaaaccaattcaatgggatggggtgtgagatccttaaattccatcccttcaggaagttttatctgt |
2513610 |
T |
|
| Q |
708 |
gaatatattggagaggttcttgaagaaaaggaagctg |
744 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2513611 |
gaatatattggagaggttcttgaagaaaaggaagctg |
2513647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 8 - 744
Target Start/End: Original strand, 2496743 - 2497481
Alignment:
| Q |
8 |
gagcagagataaagagccagaagatcagaagcttgaacggggcaatcttgctctgaagaacagtagcgtggtaaagaattctgttagggtgatacgaggc |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| | || ||||||||||||||| |||||||| ||| |
|
|
| T |
2496743 |
gagcagtgataaagagccagaagatcagaagcttgaacggggaaatcttgctttgaagaacagtaatgaggaaaagaattctgttagagtgatacggggc |
2496842 |
T |
|
| Q |
108 |
tctgaatcgatggatggaaaaagcaagatatatgtttatgatggactttatgtagttgagtcatgttggcaggatataggaccacatgggaagctgattt |
207 |
Q |
| |
|
| |||||| ||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||| || ||| |
|
|
| T |
2496843 |
tatgaatcaatggacggtaaaagaaagatatatgtttacgatggactttatgtagttgagtcatgttggcaggatatagggccacgtgggaagatggttt |
2496942 |
T |
|
| Q |
208 |
ataagtttcgcttgcgaagaatcccgggacaaccagagcttgtcttcaaggaagtgaagaaatctaaaaaactcaaaacaagagaaggtctatgtgtcga |
307 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2496943 |
ataagtttagcttgcgaagaatcccgggtcaaccagagcttgccttgaaggaagtgaagaaatctaaaaagtccaaaacaagagaaggtctatgtgtcga |
2497042 |
T |
|
| Q |
308 |
agatatttcctacgggaaagagaaaattccaatatgtgctgtgaacaccatagataacgagaaaccccctacatttaaatacgtaaccgagatgatatat |
407 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2497043 |
agatatttcctacgggaaagagaaa-ttcctatatgtgctgtgaacaccatagataacgagaaaccccctacatttaaatacataaccgagatgatatat |
2497141 |
T |
|
| Q |
408 |
cctgaatgttgcaatcttgtccctccaaaaggatgtaattgtactaatggatgctctgaccataagaaatgttcttgtgtagtgaaaaatggtggggaga |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
2497142 |
cctgaatgttgcaatcttgtccctccaaaaggatgtaattgtactaatggatgctctgaccataagaaatgttcttgtgtagtaaaaaatggtggcgaga |
2497241 |
T |
|
| Q |
508 |
ttccatttaatcataatggggatattgtaaaagtaaagcctctagtctatgagtgtggtcctaaatgcaagtgcccttcaacctgccataacagagttag |
607 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2497242 |
ttccatttaatcataatggggatattgtagaagtaaagcctctagtctatgagtgtggtcctaaatgcaagtgcccttcaacctgccataatagagttag |
2497341 |
T |
|
| Q |
608 |
ccaacttggcataaatattcaactcgaaatttttaaaacc---aattcaatgggatggggtgtgagatccttaaattccatcccttcaggaagttttatc |
704 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2497342 |
ccaacttggcataaatattcaacttgaaatttttaaaaacctaaattcaatgggatggggtgtaagatccttaaattccatcccttcaggaagttttatc |
2497441 |
T |
|
| Q |
705 |
tgtgaatatattggagaggttcttgaagaaaaggaagctg |
744 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2497442 |
tgtgaatatattggagaggttcttgaagaaaaggaagctg |
2497481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 8 - 744
Target Start/End: Original strand, 4259359 - 4260098
Alignment:
| Q |
8 |
gagcagagataaagagccagaagatcagaagcttgaacggggcaatcttgctctgaagaacagtagcgtggtaaagaattctgttagggtgatacgaggc |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||||||||||||| ||| |
|
|
| T |
4259359 |
gagcagtgataaagagccagaagatcagaagcttgaacggggcaatcttgctttgaagaacagtagtgaggtcaagaattctgttagggtgatacggggc |
4259458 |
T |
|
| Q |
108 |
tctgaatcgatggatggaaaaagcaagatatatgtttatgatggactttatgtagttgagtcatgttggcaggatataggaccacatgggaagctgattt |
207 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||| |||||||| |||| ||||||||||| |||||||||||| || ||||||||||||||| ||| |
|
|
| T |
4259459 |
tctgaatcagcggatggaaaaagcaggatatatgtttacgatggactctatgaagttgagtcatattggcaggatatggggccacatgggaagctggttt |
4259558 |
T |
|
| Q |
208 |
ataagtttcgcttgcgaagaatcccgggacaaccagagcttgtcttcaaggaagtgaagaaatctaaaaaact---caaaacaagagaaggtctatgtgt |
304 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||| | |||||| |||||||||||||||| | |||||||||||||||||||| || |
|
|
| T |
4259559 |
ataagtttcgcttgcgaagaaagccgggtcaaccagagcttgcttggaaggaactgaagaaatctaaaaagttgtccaaaacaagagaaggtctatccgt |
4259658 |
T |
|
| Q |
305 |
cgaagatatttcctacgggaaagagaaaattccaatatgtgctgtgaacaccatagataacgagaaaccccctacatttaaatacgtaaccgagatgata |
404 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| |
|
|
| T |
4259659 |
tgttgatatttcctacgggaaagagaaaattcccatatgtgctgtgaacaccatagataacgagaaaccccctccatttaaatacataactaagatgatg |
4259758 |
T |
|
| Q |
405 |
tatcctgaatgttgcaatcttgtccctccaaaaggatgtaattgtactaatggatgctctgaccataagaaatgttcttgtgtagtgaaaaatggtgggg |
504 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||| |||| |
|
|
| T |
4259759 |
tatcctgattgttgcaatattgtccctccaaaaggctgtaattgtactaatggatgctctgaccatgagaaatgttcttgtgtactcaaaaatggggggg |
4259858 |
T |
|
| Q |
505 |
agattccatttaatcataatggggatattgtaaaagtaaagcctctagtctatgagtgtggtcctaaatgcaagtgcccttcaacctgccataacagagt |
604 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| ||| |||||||||||||||||||||||| ||||||||| |||||||| ||||||| |||| ||||| |
|
|
| T |
4259859 |
agattccatttaatcataatggagctattgtagaagcaaagcctctagtctatgagtgtgggcctaaatgcgagtgccctccaacctgttataatagagt |
4259958 |
T |
|
| Q |
605 |
tagccaacttggcataaatattcaactcgaaatttttaaaaccaattcaatgggatggggtgtgagatccttaaattccatcccttcaggaagttttatc |
704 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| |||||||||||| |
|
|
| T |
4259959 |
cagccaacttggcataaatattcaactcgaaatttttaaaaccaagtcaatgggatggggtgtaagatccttgaattccatcccttctggaagttttatc |
4260058 |
T |
|
| Q |
705 |
tgtgaatatattggagaggttcttgaagaaaaggaagctg |
744 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
4260059 |
tgtgaatatattggagaggttcttgaggacaaggaagctg |
4260098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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