View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11940_high_6 (Length: 667)

Name: NF11940_high_6
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11940_high_6
NF11940_high_6
[»] chr8 (3 HSPs)
chr8 (209-650)||(30702889-30703350)
chr8 (12-161)||(30702692-30702841)
chr8 (12-73)||(18004766-18004827)
[»] chr3 (2 HSPs)
chr3 (12-117)||(11294693-11294798)
chr3 (326-491)||(19116442-19116607)
[»] chr2 (3 HSPs)
chr2 (311-490)||(28917738-28917908)
chr2 (12-117)||(3250509-3250614)
chr2 (12-117)||(35431064-35431169)
[»] chr5 (2 HSPs)
chr5 (293-404)||(20693632-20693741)
chr5 (311-388)||(35749888-35749964)
[»] chr7 (1 HSPs)
chr7 (438-535)||(18853228-18853326)
[»] chr4 (3 HSPs)
chr4 (326-490)||(4636231-4636394)
chr4 (209-294)||(4636089-4636173)
chr4 (311-357)||(49300141-49300187)
[»] chr1 (1 HSPs)
chr1 (439-478)||(34312855-34312894)


Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 209 - 650
Target Start/End: Original strand, 30702889 - 30703350
Alignment:
Q  209 ttgcattgcatatatgaaagttagttcaacaaatcacatatatattgtcttgtaaatcttttctcaccttaacttggatatttcga-------------- 294  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||||||||||||||||||||||                  
T  30702889 ttgcattgcatatatgaaagttagttcaacaaatcacacatacattgttttgttaatcttttctcaccttaacttggatatttcgagcataaagaatttt 30702988  T
Q  295 --------tttgtgactcttgttccctatgaaaaacttctatatatacataataagaaataactgaaactagcagttctaaaactataagtcttcgacaa 386  Q
            ||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| ||||    
T  30702989 gtatttgatttttgacccttgttccctatgaaaaacttctatatatacacaataagaaataactgaaactaacggttctaaaactataagtcttccacaa 30703088  T
Q  387 atccaacattcttccacgtgtctttttaacctttgaccttgtctctttacaaacaatttgaatttattctgtcgaagctgaatgattttgaatataccaa 486  Q
    ||||||||| |||||||||| |||   |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30703089 atccaacatgcttccacgtgccttc--aacctttgaccttgtctctttacagacaatttgaatttattctgtcgaagctgaatgattttgaatatgccaa 30703186  T
Q  487 gactatctcaacctatcgaagtaatttatttttggattaacaccaagagcgaaaatttaactttggccaaacagttttccggtcgaaaacacatattgaa 586  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  30703187 gactatcacaacctatcgaagtaatttatttttggattaacaccaagagcgaaaatttaacttcggccaaacagttttcaggtcgaaaacacatattgaa 30703286  T
Q  587 aatgcaggctaagagattgtcactttgcctataaattagtagaacacgctgctctaagatatct 650  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30703287 aatgcaggctaagagattgtcactttgcctataaattagtagaacacgctgctctaagatatct 30703350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 30702692 - 30702841
Alignment:
Q  12 gagatgaaataaatacctagccacctataaatcttgttccaaacactgccaaatatgtcacatcagattagtaggtgacatatcgacttcatggaaccac 111  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  30702692 gagatgaaataaatagctagccacctataaatcttgttccaaacactgccaaatatgtcacatcggattagtaggtgacatatcgactccatggaaccac 30702791  T
Q  112 atccacgggtggtttaatgagcaatagctaaggtttcttagaatcagcgg 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30702792 atccacgggtggtttaatgagcaatagctaaggtttcttagaatcagcgg 30702841  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 18004766 - 18004827
Alignment:
Q  12 gagatgaaataaatacctagccacctataaatcttgttccaaacactgccaaatatgtcaca 73  Q
    ||||||||||||||||| ||||||| ||||| | ||| ||||| |||||||||||| |||||    
T  18004766 gagatgaaataaataccaagccaccgataaaccatgtgccaaatactgccaaatatatcaca 18004827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 11294798 - 11294693
Alignment:
Q  12 gagatgaaataaatacctagccacctataaatcttgttccaaacactgccaaatatgtcacatcagattagtaggtgacatatcgacttcatggaaccac 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||  | ||| |||||||||||||||| ||||||| |||    
T  11294798 gagatgaaataaatacctagccacctataaatcttgttccaaacattgccaaagatgtcacatcgaagtagaaggtgacatatcgactccatggaagcac 11294699  T
Q  112 atccac 117  Q
    ||||||    
T  11294698 atccac 11294693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 326 - 491
Target Start/End: Original strand, 19116442 - 19116607
Alignment:
Q  326 tatatatacataataagaaataactgaaactagcagttctaaaac--tataagtcttcgacaaatccaacattcttccacgtgtctttttaacctttgac 423  Q
    |||||||| |||||||| | ||||||| |||| | || ||||||   ||||||||||||||||||||||||| ||||||||||||  | ||||||||| |    
T  19116442 tatatatatataataagtagtaactgagactaacggtcctaaaaaattataagtcttcgacaaatccaacatgcttccacgtgtc--tctaacctttgtc 19116539  T
Q  424 cttgtctctttacaaacaatttgaatttatt-ctgtcgaagctgaatgattttgaatataccaagacta 491  Q
     ||  ||||| | |||  |||||||||| || |||||||| |||||||| ||||||||| ||| |||||    
T  19116540 ttttcctcttcataaaggatttgaatttcttactgtcgaaactgaatga-tttgaatatgccatgacta 19116607  T

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Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 311 - 490
Target Start/End: Complemental strand, 28917908 - 28917738
Alignment:
Q  311 cctatgaaaaacttctatatatacataataagaaataactgaaactagcagttctaaaactataagtcttcgacaaatccaacattcttccacgtgtctt 410  Q
    |||||| ||| ||||||||| || | |||||||| |||| ||||||| | ||  | |||||||||||||||||||| |||||||| |||||| |||||||    
T  28917908 cctatgtaaatcttctatatgtatacaataagaagtaaccgaaactaacggtctttaaactataagtcttcgacaactccaacatgcttccatgtgtctt 28917809  T
Q  411 tttaacctttgaccttgtctctttacaaacaatttgaatttattctgtcgaagctgaatgattttgaatataccaagact 490  Q
     |         |||||| ||||||||  |||||||||||||  | ||||||| |||||||||||||||||| ||||||||    
T  28917808 ct---------accttgcctctttaccgacaatttgaatttcctatgtcgaaactgaatgattttgaatatgccaagact 28917738  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 3250509 - 3250614
Alignment:
Q  12 gagatgaaataaatacctagccacctataaatcttgttccaaacactgccaaatatgtcacatcagattagtaggtgacatatcgacttcatggaaccac 111  Q
    ||||||||||||||||| ||||||| ||||| | ||| ||||||  ||||||| |||||||| | |||||  ||||||||| |||||| |||||| ||||    
T  3250509 gagatgaaataaataccgagccaccgataaaccctgtaccaaaccttgccaaagatgtcacaacggattaaaaggtgacatgtcgactccatggagccac 3250608  T
Q  112 atccac 117  Q
    | ||||    
T  3250609 aaccac 3250614  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 35431169 - 35431064
Alignment:
Q  12 gagatgaaataaatacctagccacctataaatcttgttccaaacactgccaaatatgtcacatcagattagtaggtgacatatcgacttcatggaaccac 111  Q
    ||||||||||||||||| ||||||| ||||| | |   ||||||||||||||| |||||||||| ||| || ||||||||  |||||| |||| | ||||    
T  35431169 gagatgaaataaataccaagccaccgataaaccctacaccaaacactgccaaagatgtcacatcggatcagaaggtgacacgtcgactccatgtagccac 35431070  T
Q  112 atccac 117  Q
    | ||||    
T  35431069 aaccac 35431064  T

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Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 293 - 404
Target Start/End: Complemental strand, 20693741 - 20693632
Alignment:
Q  293 gatttgtgactcttgttccctatgaaaaacttctatatatacataataagaaataactgaaactagcagttctaaaactataagtcttcgacaaatccaa 392  Q
    |||||||||| |||||| | |||||||| ||||||||||||||| |  ||||||||||||||||| | || || ||||||||||||||| |||||| |||    
T  20693741 gatttgtgacccttgtttcttatgaaaa-cttctatatatacatgagtagaaataactgaaactaacggtcct-aaactataagtcttcaacaaattcaa 20693644  T
Q  393 cattcttccacg 404  Q
    | | ||||||||    
T  20693643 cttgcttccacg 20693632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 311 - 388
Target Start/End: Original strand, 35749888 - 35749964
Alignment:
Q  311 cctatgaaaaacttctatatatacataataagaaataactgaaactagcagttctaaaactataagtcttcgacaaat 388  Q
    |||||||||||||||||||||||||| |  |||||||||||||| || | ||||| |||||||||| |||||||||||    
T  35749888 cctatgaaaaacttctatatatacatgaatagaaataactgaaaataacggttct-aaactataagacttcgacaaat 35749964  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 438 - 535
Target Start/End: Original strand, 18853228 - 18853326
Alignment:
Q  438 aacaatttgaatttattctgtcgaagct-gaatgattttgaatataccaagactatctcaacctatcgaagtaatttatttttggattaacaccaagag 535  Q
    |||||||||||||| ||||||||||  | ||||||||||||||||  |||||||||| ||   ||||||||||| |||||| |||||||||| ||||||    
T  18853228 aacaatttgaatttcttctgtcgaaaattgaatgattttgaatatgtcaagactatcacagtttatcgaagtaacttatttctggattaacatcaagag 18853326  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 326 - 490
Target Start/End: Original strand, 4636231 - 4636394
Alignment:
Q  326 tatatatacataataagaaataactgaaac-tagcagttctaaaactataagtcttcgacaaatccaacattcttccacgtgtctttttaacctttgacc 424  Q
    |||||||||||||||||||||||||||||  || |||| ||||| ||  || |||||||||||||||||||   |||| |||||  || ||||||| |||    
T  4636231 tatatatacataataagaaataactgaaaaataacagtcctaaa-ctgcaaatcttcgacaaatccaacataactccatgtgtc--ttcaacctttaacc 4636327  T
Q  425 ttgtctctttacaaacaatttgaatttattctgtcg-aagctgaatgattttgaatataccaagact 490  Q
    ||| |||||   ||||||||||||| |  ||||||| ||||  |||||||| | |||||||||||||    
T  4636328 ttgcctcttcgtaaacaatttgaatcttctctgtcgaaagccaaatgatttgggatataccaagact 4636394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 294
Target Start/End: Original strand, 4636089 - 4636173
Alignment:
Q  209 ttgcattgcatatatgaaagttagttcaacaaatcacatatatattgtcttgtaaatcttttctcaccttaacttggatatttcga 294  Q
    ||||| |||||| |||||| || || || ||||||||| |||||||||||||| | |||||||||||  ||||||||||| |||||    
T  4636089 ttgcagtgcataaatgaaa-ttggtacatcaaatcacacatatattgtcttgttactcttttctcacgataacttggatagttcga 4636173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 311 - 357
Target Start/End: Complemental strand, 49300187 - 49300141
Alignment:
Q  311 cctatgaaaaacttctatatatacataataagaaataactgaaacta 357  Q
    ||||||||||||||||| |||||||| |  |||||||||||||||||    
T  49300187 cctatgaaaaacttctacatatacatgaacagaaataactgaaacta 49300141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 478
Target Start/End: Complemental strand, 34312894 - 34312855
Alignment:
Q  439 acaatttgaatttattctgtcgaagctgaatgattttgaa 478  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  34312894 acaatttgaatttattctatcgaaactgaatgattttgaa 34312855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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