View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_high_9 (Length: 597)
Name: NF11940_high_9
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 10 - 476
Target Start/End: Complemental strand, 9410856 - 9410389
Alignment:
| Q |
10 |
atgaggggagggattcaaaattatctattggaagaactttgaaggagtgaagttaattggattgaactttgaagttcccaagttg-aggtgttgaatttt |
108 |
Q |
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| T |
9410856 |
atgagggcagggattcaaaat---ctattggaagaactttgaaggagtgaagttaattggattgaactttgaagctcccaagttggaggtgttgaattt- |
9410761 |
T |
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| Q |
109 |
gtcacatacagttgactgtgaaaagtcccaaaaatatatgcaaacatagtttatactacaatttggggtaatcacatatttttgtctagtctata---nn |
205 |
Q |
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| T |
9410760 |
gtcacatacagttgactgtgaaaagtcccaaaaatatatgcaaacatagtttatactacaatttcgggcaatcacgtatttttgtctagtctatattttt |
9410661 |
T |
|
| Q |
206 |
nnnnnggtttattataatattggtacgaagttttctcaccgttgattaataaatgactaatcttc-ccaaagaacatgcttttctgaagatatgaattca |
304 |
Q |
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| T |
9410660 |
tttttggtttattataatattggtacgaagttttctcaccgctgattaataaatgactaatcttcgccaaggaacatgcttttctgaagatatgaattca |
9410561 |
T |
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| Q |
305 |
atgtaaaatgcttttctgagatatgcagacattcttctcattgannnnnnnnnnnnnnnnnacggttagattcttaaaacattgccattttgaagtgagg |
404 |
Q |
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| T |
9410560 |
atgtaaaatgcttttctgagatatgcatacattcttctcattgattttttccaatttttttacggttagattcttaaaacattgccattttgaagtgagg |
9410461 |
T |
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| Q |
405 |
agaaaccattcaattcatgtttggaatgtagtttgggatgttgcagtatacaatagttgcagctatatatgt |
476 |
Q |
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| T |
9410460 |
agaaaccattcaattcatgtttggaatgtagtttgggatgttgcagtatacaatagttgcagctatatatgt |
9410389 |
T |
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