View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11940_low_1 (Length: 976)

Name: NF11940_low_1
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11940_low_1
NF11940_low_1
[»] chr4 (16 HSPs)
chr4 (757-964)||(5195431-5195638)
chr4 (756-964)||(5159788-5159996)
chr4 (756-964)||(5182036-5182244)
chr4 (757-964)||(5172705-5172912)
chr4 (757-964)||(4842613-4842820)
chr4 (764-964)||(5213604-5213804)
chr4 (18-130)||(21014923-21015035)
chr4 (28-130)||(29540197-29540299)
chr4 (139-216)||(21015089-21015166)
chr4 (27-110)||(35849976-35850059)
chr4 (149-198)||(20136201-20136250)
chr4 (18-130)||(24914684-24914795)
chr4 (18-109)||(40763639-40763730)
chr4 (444-521)||(4843056-4843133)
chr4 (899-964)||(4857087-4857151)
chr4 (444-521)||(5181738-5181815)
[»] chr8 (5 HSPs)
chr8 (151-216)||(11623340-11623405)
chr8 (18-95)||(11623487-11623567)
chr8 (153-199)||(13111866-13111912)
chr8 (36-128)||(45311810-45311904)
chr8 (151-193)||(33023939-33023981)
[»] chr2 (5 HSPs)
chr2 (157-203)||(11929322-11929368)
chr2 (18-92)||(25642917-25642991)
chr2 (149-199)||(25658871-25658921)
chr2 (149-194)||(15582613-15582658)
chr2 (18-130)||(38205219-38205332)
[»] scaffold0027 (1 HSPs)
scaffold0027 (149-200)||(25499-25550)
[»] chr1 (11 HSPs)
chr1 (18-81)||(13091911-13091974)
chr1 (18-81)||(13109070-13109133)
chr1 (36-130)||(15741713-15741806)
chr1 (143-200)||(15742034-15742091)
chr1 (26-110)||(29114559-29114644)
chr1 (18-130)||(13183910-13184022)
chr1 (143-190)||(13108920-13108967)
chr1 (143-190)||(13184081-13184128)
chr1 (26-80)||(36353263-36353317)
chr1 (151-189)||(42066912-42066950)
chr1 (37-74)||(5956184-5956221)
[»] chr5 (2 HSPs)
chr5 (151-196)||(33093416-33093461)
chr5 (151-196)||(7959561-7959606)
[»] chr7 (1 HSPs)
chr7 (18-61)||(3127273-3127316)
[»] chr6 (1 HSPs)
chr6 (149-258)||(24207923-24208033)
[»] chr3 (2 HSPs)
chr3 (36-110)||(34365872-34365946)
chr3 (158-199)||(30888954-30888994)


Alignment Details
Target: chr4 (Bit Score: 120; Significance: 7e-61; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 757 - 964
Target Start/End: Original strand, 5195431 - 5195638
Alignment:
Q  757 ttaattctgacaggattatgcaagttgaaagatttggtagagctagatatcagcaaaaacatgtttggtgctaaacttcctgagtgtttaagcaacttaa 856  Q
    |||||| |||||||| ||||||| || || ||||||||||| || ||||||||||||||||||||| ||||||||||||| || ||||||||||||||||    
T  5195431 ttaattatgacaggactatgcaattttaaggatttggtagaactggatatcagcaaaaacatgtttagtgctaaacttccagattgtttaagcaacttaa 5195530  T
Q  857 caaatctcagagttcttgatagtggcaataatttgttcattggaaattttccatcgttcattagcaatctcacatccctaacatacttatccttctatgg 956  Q
    |||| ||||||||||||||   | | |||||| |||||| ||||||||||||||| |||||||||||||||||||| ||  |||||||||||||||||||    
T  5195531 caaacctcagagttcttgaacttagtaataatctgttcagtggaaattttccatctttcattagcaatctcacatcactggcatacttatccttctatgg 5195630  T
Q  957 aaattaca 964  Q
    ||||||||    
T  5195631 aaattaca 5195638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 756 - 964
Target Start/End: Original strand, 5159788 - 5159996
Alignment:
Q  756 attaattctgacaggattatgcaagttgaaagatttggtagagctagatatcagcaaaaacatgtttggtgctaaacttcctgagtgtttaagcaactta 855  Q
    ||||||| |||||||| ||||||| ||||| ||||||||||| || ||||||||| | ||||||||| |||||||| |||||||||||||||||||||||    
T  5159788 attaattatgacaggactatgcaatttgaaggatttggtagaactggatatcagccagaacatgtttagtgctaaatttcctgagtgtttaagcaactta 5159887  T
Q  856 acaaatctcagagttcttgatagtggcaataatttgttcattggaaattttccatcgttcattagcaatctcacatccctaacatacttatccttctatg 955  Q
    ||||| ||||||||||||||   | | |||||| |||||| |||||| |||||||| |||||||||||||||||||| ||  ||||||||||||||||||    
T  5159888 acaaacctcagagttcttgaacttagtaataatctgttcagtggaaagtttccatctttcattagcaatctcacatcactggcatacttatccttctatg 5159987  T
Q  956 gaaattaca 964  Q
    |||||||||    
T  5159988 gaaattaca 5159996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 756 - 964
Target Start/End: Original strand, 5182036 - 5182244
Alignment:
Q  756 attaattctgacaggattatgcaagttgaaagatttggtagagctagatatcagcaaaaacatgtttggtgctaaacttcctgagtgtttaagcaactta 855  Q
    ||||||| |||||||| ||||||| ||||| |||||||||||  | ||||||||| | ||||||||| ||||||||||||| ||||||||||||||||||    
T  5182036 attaattatgacaggactatgcaatttgaaggatttggtagaattggatatcagctataacatgtttagtgctaaacttccagagtgtttaagcaactta 5182135  T
Q  856 acaaatctcagagttcttgatagtggcaataatttgttcattggaaattttccatcgttcattagcaatctcacatccctaacatacttatccttctatg 955  Q
    ||||| || |||||||||||   | | |||||| |||||| ||||||||||||||| |||||||||||||||||||| ||  ||||||||||||||||||    
T  5182136 acaaaccttagagttcttgaacttagtaataatctgttcagtggaaattttccatctttcattagcaatctcacatcactggcatacttatccttctatg 5182235  T
Q  956 gaaattaca 964  Q
    |||||||||    
T  5182236 gaaattaca 5182244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 757 - 964
Target Start/End: Original strand, 5172705 - 5172912
Alignment:
Q  757 ttaattctgacaggattatgcaagttgaaagatttggtagagctagatatcagcaaaaacatgtttggtgctaaacttcctgagtgtttaagcaacttaa 856  Q
    |||||| |||||||| ||||||| ||||| ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  5172705 ttaattatgacaggactatgcaatttgaaggatttggtagaactggatatcagcaaaaacatgtttggggctaaacttcctgagtgtttaagtaacttaa 5172804  T
Q  857 caaatctcagagttcttgatagtggcaataatttgttcattggaaattttccatcgttcattagcaatctcacatccctaacatacttatccttctatgg 956  Q
    |||| |||||| |||||||   | || ||||| | |||| ||||||||||||||| |||||||| |||||||||||| | |||| ||||||  ||||||     
T  5172805 caaacctcagaattcttgaccttagccataatctattcagtggaaattttccatccttcattagtaatctcacatccttgacattcttatcactctatga 5172904  T
Q  957 aaattaca 964  Q
    ||||||||    
T  5172905 aaattaca 5172912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 757 - 964
Target Start/End: Complemental strand, 4842820 - 4842613
Alignment:
Q  757 ttaattctgacaggattatgcaagttgaaagatttggtagagctagatatcagcaaaaacatgtttggtgctaaacttcctgagtgtttaagcaacttaa 856  Q
    |||||| |||||||| ||||||| ||||| ||||||| ||| || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  4842820 ttaattatgacaggactatgcaatttgaaggatttggaagaactggatatcagcaaaaacatgtttggggctaaacttcctgagtgtttaagtaacttaa 4842721  T
Q  857 caaatctcagagttcttgatagtggcaataatttgttcattggaaattttccatcgttcattagcaatctcacatccctaacatacttatccttctatgg 956  Q
    |||| |||||| |||||||   | || ||||| |||||  ||||||||||||||| |||| || ||||||||||||| | |||| ||||||  ||||||     
T  4842720 caaacctcagaattcttgaccttagccataatctgttcggtggaaattttccatccttcactaccaatctcacatccttgacattcttatcactctatga 4842621  T
Q  957 aaattaca 964  Q
    ||||||||    
T  4842620 aaattaca 4842613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 764 - 964
Target Start/End: Original strand, 5213604 - 5213804
Alignment:
Q  764 tgacaggattatgcaagttgaaagatttggtagagctagatatcagcaaaaacatgtttggtgctaaacttcctgagtgtttaagcaacttaacaaatct 863  Q
    |||||||| ||||||| ||||| |||||||||||||||||||||||| | ||||||||| | ||  ||||||| ||||||||||||||||||||||| ||    
T  5213604 tgacaggactatgcaaattgaaggatttggtagagctagatatcagctataacatgtttagcgcgcaacttcccgagtgtttaagcaacttaacaaacct 5213703  T
Q  864 cagagttcttgatagtggcaataatttgttcattggaaattttccatcgttcattagcaatctcacatccctaacatacttatccttctatggaaattac 963  Q
     |  ||||||||   | || |||||||||||| ||||||||||||||| |||||||| ||||||||||| ||  ||||||||||| ||| ||||||||||    
T  5213704 gaatgttcttgaacttagctataatttgttcagtggaaattttccatccttcattagtaatctcacatcactggcatacttatccctctttggaaattac 5213803  T
Q  964 a 964  Q
    |    
T  5213804 a 5213804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 21014923 - 21015035
Alignment:
Q  18 attttaagtattgagatagatatgatagaacatgttgatgtagacacaattcttagtgactttgtgtctagaaatgcctgtatgaattgttttatttgag 117  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | |||  ||||||||||| ||||    
T  21014923 attttaggtattgagatagatatgatagaacatgttgatgtagacacgattcttagtgactttgtgtccagaaatgtccgtagaaattgttttatatgag 21015022  T
Q  118 catttgaatatta 130  Q
    ||||| |||||||    
T  21015023 catttaaatatta 21015035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 29540299 - 29540197
Alignment:
Q  28 ttgagatagatatgatagaacatgttgatgtagacacaattcttagtgactttgtgtctagaaatgcctgtatgaattgttttatttgagcatttgaata 127  Q
    |||||| | ||||||||||| || ||||||||||||||||| ||| ||||||||  ||||||||| | |||||||||| |||| | |||| |||| ||||    
T  29540299 ttgagacaaatatgatagaatatattgatgtagacacaattattaatgactttgcatctagaaatacttgtatgaattattttgtatgagtatttaaata 29540200  T
Q  128 tta 130  Q
    |||    
T  29540199 tta 29540197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 21015089 - 21015166
Alignment:
Q  139 ttcgtaacacagtaaaaactatcctcttcaagtaaattattttcacactttggaaatttaaaattgttatttactctt 216  Q
    ||||||||  |||||||||||| ||||||||| |||||  |||||||||||| ||||||||||||  ||| |||||||    
T  21015089 ttcgtaacgtagtaaaaactatactcttcaagcaaattgctttcacactttgaaaatttaaaatttgtatatactctt 21015166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 35850059 - 35849976
Alignment:
Q  27 attgagatagatatgatagaacatgttgatgtagacacaattcttagtgactttgtgtctagaaatgcctgtatgaattgtttt 110  Q
    |||||||| |||||||||||||||  || ||||||||||||| ||| ||||||||  |||| |||||  |||||||||| ||||    
T  35850059 attgagatggatatgatagaacataatgctgtagacacaattattaatgactttgcatctaaaaatgtttgtatgaattatttt 35849976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 20136201 - 20136250
Alignment:
Q  149 agtaaaaactatcctcttcaagtaaattattttcacactttggaaattta 198  Q
    |||||||||||||||||||||  ||||||||||||||||||  |||||||    
T  20136201 agtaaaaactatcctcttcaaacaaattattttcacactttaaaaattta 20136250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 24914684 - 24914795
Alignment:
Q  18 attttaagtattgagatagatatgatagaacatgttgatgtagacacaattcttagtgactttgtgtctagaaatgcctgtatgaattgttttatttgag 117  Q
    |||||| ||||||||| |||  ||||||||| | ||||  | ||||||||| ||||||||||||  | |||||||||  ||| |||||||||| | |||     
T  24914684 attttatgtattgagaaagacgtgatagaac-tattgacattgacacaattgttagtgactttgcatatagaaatgctcgtaggaattgttttgtatgaa 24914782  T
Q  118 catttgaatatta 130  Q
    |||||||||||||    
T  24914783 catttgaatatta 24914795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 40763730 - 40763639
Alignment:
Q  18 attttaagtattgagatagatatgatagaacatgttgatgtagacacaattcttagtgactttgtgtctagaaatgcctgtatgaattgttt 109  Q
    |||||| ||||| ||| |||||||||| || || |||| |||||||||||| ||| ||||||||  |  ||||||| | |||||||||||||    
T  40763730 attttatgtattaagaaagatatgatataatatattgaagtagacacaattattaatgactttgcattcagaaatggcagtatgaattgttt 40763639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 444 - 521
Target Start/End: Complemental strand, 4843133 - 4843056
Alignment:
Q  444 tgcagatgttcagaatttgagaaaccttagaatgttgagtttaagggataattacatgaatggctcaattgaaggtat 521  Q
    ||||||||||||  |||||| |||| | | |||||| || ||||| |||||| | ||||| |||||||||||||||||    
T  4843133 tgcagatgttcaacatttgaaaaacttgaaaatgttaaggttaagcgataatcaaatgaagggctcaattgaaggtat 4843056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 899 - 964
Target Start/End: Complemental strand, 4857151 - 4857087
Alignment:
Q  899 gaaattttccatcgttcattagcaatctcacatccctaacatacttatccttctatggaaattaca 964  Q
    ||||||||||||| |||| || |||||||||||| ||  ||||| ||||| |||||||||||||||    
T  4857151 gaaattttccatccttcactaccaatctcacatctcttgcatac-tatccatctatggaaattaca 4857087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 444 - 521
Target Start/End: Original strand, 5181738 - 5181815
Alignment:
Q  444 tgcagatgttcagaatttgagaaaccttagaatgttgagtttaagggataattacatgaatggctcaattgaaggtat 521  Q
    ||||||||||||  |||||| |||| | | |||||| ||||||||  ||||| | ||||| |||||||||||||||||    
T  5181738 tgcagatgttcaacatttgaaaaacttgaaaatgttaagtttaagaaataatcaaatgaacggctcaattgaaggtat 5181815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 1e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 11623405 - 11623340
Alignment:
Q  151 taaaaactatcctcttcaagtaaattattttcacactttggaaatttaaaattgttatttactctt 216  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||| || |||| |||||||    
T  11623405 taaaaactatcctcttcaagcaaattattttcacactttgaaaatttaaattttttatatactctt 11623340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 11623567 - 11623487
Alignment:
Q  18 attttaagtattgagatagatatgatagaacatg---ttgatgtagacacaattcttagtgactttgtgtctagaaatgcc 95  Q
    |||||| ||||||||||| ||||||||||||||    ||||||||||||||||| |||||||||| || ||||||||||||    
T  11623567 attttatgtattgagataaatatgatagaacatactattgatgtagacacaattattagtgacttagtatctagaaatgcc 11623487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 13111866 - 13111912
Alignment:
Q  153 aaaactatcctcttcaagtaaattattttcacactttggaaatttaa 199  Q
    |||||||||||||||||  ||||||||||||||||||| ||||||||    
T  13111866 aaaactatcctcttcaaacaaattattttcacactttgaaaatttaa 13111912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 128
Target Start/End: Original strand, 45311810 - 45311904
Alignment:
Q  36 gatatgatagaacatgttgatgtagacaca--attcttagtgactttgtgtctagaaatgcctgtatgaattgttttatttgagcatttgaatat 128  Q
    ||||| ||||||||| |||||||||||| |  ||| ||| ||||||||  ||||| ||||| |||| ||||| |||||| | |||||||||||||    
T  45311810 gatataatagaacatattgatgtagacatattattattaatgactttgcatctagtaatgcttgtaagaattattttatataagcatttgaatat 45311904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 193
Target Start/End: Complemental strand, 33023981 - 33023939
Alignment:
Q  151 taaaaactatcctcttcaagtaaattattttcacactttggaa 193  Q
    ||||||||||| |||||||| ||||||||||||||||| ||||    
T  33023981 taaaaactatcatcttcaagaaaattattttcacacttaggaa 33023939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 11929322 - 11929368
Alignment:
Q  157 ctatcctcttcaagtaaattattttcacactttggaaatttaaaatt 203  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||    
T  11929322 ctatcatcttcaagtaaattattttcacactttagaaatttaaaatt 11929368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 25642991 - 25642917
Alignment:
Q  18 attttaagtattgagatagatatgatagaacatgttgatgtagacacaattcttagtgactttgtgtctagaaat 92  Q
    |||||| ||||||| | | ||| |||||||||| ||||||||||||||||| ||| ||||||| | |||||||||    
T  25642991 attttatgtattgaaacaaatacgatagaacatattgatgtagacacaattattaatgactttatatctagaaat 25642917  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 25658871 - 25658921
Alignment:
Q  149 agtaaaaactatcctcttcaagtaaattattttcacactttggaaatttaa 199  Q
    ||||||||| ||| || ||||| ||||||||||||||||||||||||||||    
T  25658871 agtaaaaacaatcatcatcaagcaaattattttcacactttggaaatttaa 25658921  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 15582613 - 15582658
Alignment:
Q  149 agtaaaaactatcctcttcaagtaaattattttcacactttggaaa 194  Q
    |||||||||||| ||||||||| |||||||||||| ||||||||||    
T  15582613 agtaaaaactatactcttcaagcaaattattttcatactttggaaa 15582658  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 38205219 - 38205332
Alignment:
Q  18 attttaagtattgagatagatatgatagaacatgttgatgtagacacaattcttagtgac-tttgtgtctagaaatgcctgtatgaattgttttatttga 116  Q
    |||||| ||||||||| |||||||||||||||| |  ||| | |||||||| |||| ||| ||||  ||| |||||||   || |||||||||| | |||    
T  38205219 attttatgtattgagaaagatatgatagaacatatcaatgcaaacacaatttttagcgacttttgcatcttgaaatgctcataggaattgttttgtatga 38205318  T
Q  117 gcatttgaatatta 130  Q
    ||||||| ||||||    
T  38205319 gcatttggatatta 38205332  T

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Target: scaffold0027 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 25550 - 25499
Alignment:
Q  149 agtaaaaactatcctcttcaagtaaattattttcacactttggaaatttaaa 200  Q
    ||||||||| ||| |||||||| ||||||||||||||||||||||| |||||    
T  25550 agtaaaaacaatcatcttcaagcaaattattttcacactttggaaagttaaa 25499  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000009; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 13091974 - 13091911
Alignment:
Q  18 attttaagtattgagatagatatgatagaacatgttgatgtagacacaattcttagtgactttg 81  Q
    |||||| ||||||||| | |||||||||||||| ||||||| |||||| || ||||||||||||    
T  13091974 attttatgtattgagaaatatatgatagaacatattgatgttgacacatttattagtgactttg 13091911  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 13109133 - 13109070
Alignment:
Q  18 attttaagtattgagatagatatgatagaacatgttgatgtagacacaattcttagtgactttg 81  Q
    |||||| ||||||||| | |||||||||||||| ||||||| |||||| || ||||||||||||    
T  13109133 attttatgtattgagaaatatatgatagaacatattgatgttgacacattttttagtgactttg 13109070  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 130
Target Start/End: Original strand, 15741713 - 15741806
Alignment:
Q  36 gatatgatagaacatgttgatgtagacacaattcttagtgactttgtgtctagaaatgcctgtatgaattgttttatttgagcatttgaatatta 130  Q
    ||||||||| ||||| |||||||||||| | || ||| |||||| |  |||||||||||  ||| |||||||||| | |||||||||||||||||    
T  15741713 gatatgataaaacatattgatgtagacata-ttattaatgacttagcatctagaaatgctggtaagaattgttttgtatgagcatttgaatatta 15741806  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 15742034 - 15742091
Alignment:
Q  143 taacacagtaaaaactatcctcttcaagtaaattattttcacactttggaaatttaaa 200  Q
    ||||| ||||||||||||||||||| |  ||||||||||||||||||  |||||||||    
T  15742034 taacatagtaaaaactatcctcttcgaacaaattattttcacactttaaaaatttaaa 15742091  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 29114559 - 29114644
Alignment:
Q  26 tattgagatagatatgatagaacatgttgatgtagacacaattct-tagtgactttgtgtctagaaatgcctgtatgaattgtttt 110  Q
    |||||||| ||||||||||||| || ||||||| ||||||||| | |||||||||| | |||| |||||| ||||  |||||||||    
T  29114559 tattgagaaagatatgatagaatatattgatgttgacacaattatatagtgactttttatctataaatgcatgtagaaattgtttt 29114644  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 13183910 - 13184022
Alignment:
Q  18 attttaagtattgagatagatatgatagaacatgttgatgtagacacaattcttagtgactttgtgtctagaaatgcctgtatgaattgttttatttgag 117  Q
    |||||| ||||||| | | |||||||||||||| ||||||| |||||| || ||||||||||||    ||||||||||  |  ||| |||||| | |||     
T  13183910 attttatgtattgaaaaatatatgatagaacatattgatgttgacacatttattagtgactttgcacttagaaatgcccattggaaatgttttgtatgaa 13184009  T
Q  118 catttgaatatta 130  Q
    |||||||||||||    
T  13184010 catttgaatatta 13184022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 190
Target Start/End: Complemental strand, 13108967 - 13108920
Alignment:
Q  143 taacacagtaaaaactatcctcttcaagtaaattattttcacactttg 190  Q
    ||||| |||||||| ||||||||||||  |||||||||||||||||||    
T  13108967 taacaaagtaaaaattatcctcttcaaacaaattattttcacactttg 13108920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 13184081 - 13184128
Alignment:
Q  143 taacacagtaaaaactatcctcttcaagtaaattattttcacactttg 190  Q
    ||||| |||||||| ||||||||||||  |||||||||||||||||||    
T  13184081 taacaaagtaaaaattatcctcttcaaacaaattattttcacactttg 13184128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 36353263 - 36353317
Alignment:
Q  26 tattgagatagatatgatagaacatgttgatgtagacacaattcttagtgacttt 80  Q
    |||||||| ||||||| ||||| || |||||||||||| |||| |||||||||||    
T  36353263 tattgagaaagatatgctagaatatattgatgtagacataattattagtgacttt 36353317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 42066950 - 42066912
Alignment:
Q  151 taaaaactatcctcttcaagtaaattattttcacacttt 189  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  42066950 taaaaactatcatcttcaagaaaattattttcacacttt 42066912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 5956184 - 5956221
Alignment:
Q  37 atatgatagaacatgttgatgtagacacaattcttagt 74  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  5956184 atatgatagaacatattgatgtagacacaattattagt 5956221  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 33093416 - 33093461
Alignment:
Q  151 taaaaactatcctcttcaagtaaattattttcacactttggaaatt 196  Q
    ||||||||||| |||||||| |||||||||||||||||| ||||||    
T  33093416 taaaaactatcatcttcaagaaaattattttcacactttagaaatt 33093461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 7959561 - 7959606
Alignment:
Q  151 taaaaactatcctcttcaagtaaattattttcacactttggaaatt 196  Q
    ||||||| ||| | ||||||||||||||||||||||||| ||||||    
T  7959561 taaaaaccatcattttcaagtaaattattttcacactttagaaatt 7959606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 3127273 - 3127316
Alignment:
Q  18 attttaagtattgagatagatatgatagaacatgttgatgtaga 61  Q
    |||||| ||||||||| |||||||||||||||| ||||||||||    
T  3127273 attttatgtattgagaaagatatgatagaacatattgatgtaga 3127316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 258
Target Start/End: Original strand, 24207923 - 24208033
Alignment:
Q  149 agtaaaaactatcctcttcaagtaaattattttcacactttggaaatttaaaattgttatttactc-ttgtttcgaacttaaattgtaggtttgttctag 247  Q
    |||||||| || ||||| ||||  ||||||||| |||||||||||||||||| || |||| || || || ||| ||| | ||||| |||||| ||| |||    
T  24207923 agtaaaaattaacctctacaagcgaattatttttacactttggaaatttaaactttttatataatcattatttagaattcaaattataggttcgttttag 24208022  T
Q  248 gccactaaaat 258  Q
    ||||| |||||    
T  24208023 gccaccaaaat 24208033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 34365872 - 34365946
Alignment:
Q  36 gatatgatagaacatgttgatgtagacacaattcttagtgactttgtgtctagaaatgcctgtatgaattgtttt 110  Q
    |||||||||||| || | || |||||||||||| ||||||||||||| |||| |||||   ||||||||| ||||    
T  34365872 gatatgatagaatatatcgacgtagacacaattattagtgactttgtatctataaatgatcgtatgaattatttt 34365946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 30888994 - 30888954
Alignment:
Q  158 tatcctcttcaagtaaattattttcacactttggaaatttaa 199  Q
    |||||||||||||||||||| ||||||||||| |||||||||    
T  30888994 tatcctcttcaagtaaatta-tttcacactttagaaatttaa 30888954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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