View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11940_low_11 (Length: 530)
Name: NF11940_low_11
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 492; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Original strand, 34729553 - 34730052
Alignment:
| Q |
18 |
ctagagacatggatttagtcgcatatgaatcccatggattggttgacagaagagagagagcacaaataaagtcttgttcatcatttgtatcagaaacggt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34729553 |
ctagagacatggatttagtcgcatatgaatcccatggattggttgacagaagagagagagcacaaataaagtcttgttcatcatttgtatcagaaacggt |
34729652 |
T |
|
| Q |
118 |
aatgaaatcttctacacctgcaaagttataaaaaatcagcacaataaacgtgaaataacctcgatcgatactcttggttgcaagaactttggatgtaaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34729653 |
aatgaaatcttctacacctgcaaagttataaaaaatcagcacaataaacgtgaaataacctcgatcgatactcttggttgcaagaactttggatgtaaaa |
34729752 |
T |
|
| Q |
218 |
tggacaatggaatcatcagaaaacatagtgacagtaccttgtgtgttagcgttgtcttttgcaggcttcaagagaaaatcttttgcttgggggagcttgc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34729753 |
tggacaatggaatcatcagaaaacatagtgacagtaccttgtgtgttagcgttgtcttttgcaggcttcaagagaaaatcttttgcttgggggagcttgc |
34729852 |
T |
|
| Q |
318 |
tgttctgcatgttttgccaggctaaatttgtagcagtctttgaattagcaaatggactcatctgttgctttccatctgcggaaccaaaatatattagaag |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34729853 |
tgttctgcatgttttgccaggctaaatttgtagcagtctttgaattagcaaatggactcatctgttgctttccatctgcggaaccaaaatatattagaag |
34729952 |
T |
|
| Q |
418 |
ttagaagagagcagtaaaatttgaatcattgagaaatgaatgacttgcaattaactacaacaaacctccaaaacaactaaaagtggatgttctttgatct |
517 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
34729953 |
ttataagagagcagtaaaatttgaatcattgagaaatgaatgacttgcaattaactacaacaaacctacaaaacaactaaaagtggatgttctttgatct |
34730052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 21 - 510
Target Start/End: Original strand, 34725499 - 34725987
Alignment:
| Q |
21 |
gagacatggatttagtcgcatatgaatcccatggattggttgacagaagagagagagcacaaataaagtcttgttcatcatttgtatcagaaacggtaat |
120 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| | | || |
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|
| T |
34725499 |
gagaaatggatttagtcgcatatgaatcccactgattggttgacagaagagagagagcacaagtaaagtcttgtgtagcatttgtatcagaaaagttcat |
34725598 |
T |
|
| Q |
121 |
gaaatcttctacacctgcaa-agttataaaaaatcagcacaataaacgtgaaataacctcgatcgatactcttggttgcaagaactttggatgtaaaatg |
219 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||| ||| ||| | ||||| ||| | ||||||||||||||| | ||||||||||||||| |
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|
| T |
34725599 |
gaaatcttctacacctgcaagagttaaaaaaaatcagcacaa-aaatgtggca-aacctggattaacactcttggttgcaaggattttggatgtaaaatg |
34725696 |
T |
|
| Q |
220 |
gacaatggaatcatcagaaaacatagtgacagtaccttgtgtgttagcgttgtcttttgcaggcttcaagagaaaatcttttgcttgggggagcttgctg |
319 |
Q |
| |
|
|| | |||| |||| ||||| |||||||||||||| | |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34725697 |
gaaattggagtcatgagaaagcatagtgacagtacttggtgtgtcaatgttgtcttttgaaggcttcaagagaaaatcttttgcttgggggagcttgctg |
34725796 |
T |
|
| Q |
320 |
ttctgcatgttttgccaggctaaatttgtagcagtctttgaattagcaaatggactcatctgttgctttccatctgcggaaccaaaatatattagaagtt |
419 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||| | |
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|
| T |
34725797 |
ttgtgcatgttttgccaggctaaatttgtagcagtcttggaattagtaaatggactcatctgttgcttcccatctgcagaaccaaaatatattagaagat |
34725896 |
T |
|
| Q |
420 |
agaagagagcagtaaaatttgaatcattgagaaatgaatgacttgcaattaactacaacaaacctccaaaacaactaaaagtggatgttct |
510 |
Q |
| |
|
|||||| | |||||||||||||||||||| ||||||||||||||||||||||||| || |||||| ||| |||| ||||||||||||||| |
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|
| T |
34725897 |
agaagacaacagtaaaatttgaatcattgtgaaatgaatgacttgcaattaactataataaacctataaatcaaccaaaagtggatgttct |
34725987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 318 - 481
Target Start/End: Original strand, 38610387 - 38610550
Alignment:
| Q |
318 |
tgttctgcatgttttgccaggctaaatttgtagcagtctttgaattagcaaatggactcatctgttgctttccatctgcggaaccaaaatatattagaag |
417 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
38610387 |
tgttgtgcatgttttgccaggctaaatatgtagcagtctttgaattagcaaatggactcatctgttgctttccatctgcagaaccgaaatatattagaag |
38610486 |
T |
|
| Q |
418 |
ttagaagagagcagtaaaatttgaatcattgagaaatgaatgacttgcaattaactacaacaaa |
481 |
Q |
| |
|
|||||||| ||||||||||| ||||| | ||||||||||||||||||||||||| |||||| |
|
|
| T |
38610487 |
acagaagagaatagtaaaatttgcatcatcgcgaaatgaatgacttgcaattaactataacaaa |
38610550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 318 - 481
Target Start/End: Original strand, 38795172 - 38795335
Alignment:
| Q |
318 |
tgttctgcatgttttgccaggctaaatttgtagcagtctttgaattagcaaatggactcatctgttgctttccatctgcggaaccaaaatatattagaag |
417 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
38795172 |
tgttgtgcatgttttgccaggctaaatatgtagcagtctttgaattagcaaatggactcatctgttgctttccatctgcagaaccgaaatatattagaag |
38795271 |
T |
|
| Q |
418 |
ttagaagagagcagtaaaatttgaatcattgagaaatgaatgacttgcaattaactacaacaaa |
481 |
Q |
| |
|
|||||||| ||||||||||| || || | ||||||||||||||||||||||||| |||||| |
|
|
| T |
38795272 |
acagaagagaatagtaaaatttgcataatcgcgaaatgaatgacttgcaattaactataacaaa |
38795335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 165 - 474
Target Start/End: Original strand, 34720402 - 34720711
Alignment:
| Q |
165 |
acgtgaaataacctcgatcgatactcttggttgcaagaactttggatgtaaaatggacaatggaatcatcagaaaacatagtgacagtaccttgtgtgtt |
264 |
Q |
| |
|
||||||||| |||| || ||||||||||||| |||| ||||| ||||||||||||||| |||||||||||| | |||||||||| || | ||||| |
|
|
| T |
34720402 |
acgtgaaatgacctgcattgatactcttggtttcaaggactttagatgtaaaatggacatcggaatcatcagatagcatagtgacaaaacttggtgtgcc |
34720501 |
T |
|
| Q |
265 |
agcgttgtcttttgcaggcttcaagagaaaatcttttgcttgggggagcttgctgttctgcatgttttgccaggctaaatttgtagcagtctttgaatta |
364 |
Q |
| |
|
| |||| |||||||| ||||||| ||||||||||| | |||||| || |||||| || ||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
34720502 |
aatgttgacttttgcatacttcaagggaaaatcttttattcgggggaactcgctgttttgtatgttttgcaaggctaaatttatagcagtctttgaatag |
34720601 |
T |
|
| Q |
365 |
gcaaatggactcatctgttgctttccatctgcggaaccaaaatatattagaagttagaagagagcagtaaaatttgaatcattgagaaatgaatgacttg |
464 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| |||| ||| ||||||||||| || ||||||| ||||||| || || |||| ||||||||||| ||| |
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|
| T |
34720602 |
gcaaatggattcatctgttgcttcccatctgcagaactaaactatattagaagataagagagagcggtaaaatgtgcatgattgtgaaatgaatgatttg |
34720701 |
T |
|
| Q |
465 |
caattaacta |
474 |
Q |
| |
|
|| |||||| |
|
|
| T |
34720702 |
taagtaacta |
34720711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 38610147 - 38610385
Alignment:
| Q |
18 |
ctagagacatggatttagtcgcatatgaatcccatggattggttgacagaagagagagagcacaaataaagtcttgttcatcatttgtatcagaaacggt |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||| |||||||||| || ||||||||| |||| ||| |||| | ||| || |
|
|
| T |
38610147 |
ctagagacatggatttaatcgcatatgaatcccacggattgattgacagaagtgaaagagcacaagtaaaaaa------atc--ttgttt---aaaatgt |
38610235 |
T |
|
| Q |
118 |
aatgaaatcttctacacctgcaa-agttataaaaaatcagcacaataaacgtg------------aaataacctcgatcgatactcttggttgcaagaac |
204 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| ||||||||| ||| ||| ||||||||| ||| |||||||||||||||||| || |
|
|
| T |
38610236 |
aatgaaatcttctacacctgcaatagttaaaaaaattcagcacaaaaaatgtggcaatagatgtgaaataacctggattgatactcttggttgcaaggac |
38610335 |
T |
|
| Q |
205 |
tttggatgtaaaatggacaatggaatcatcagaaaacatagtgacagtac |
254 |
Q |
| |
|
||||||||||||||||||| || ||||| |||||| |||||||||||||| |
|
|
| T |
38610336 |
tttggatgtaaaatggacattgaaatcaacagaaagcatagtgacagtac |
38610385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 167 - 254
Target Start/End: Original strand, 38795083 - 38795170
Alignment:
| Q |
167 |
gtgaaataacctcgatcgatactcttggttgcaagaactttggatgtaaaatggacaatggaatcatcagaaaacatagtgacagtac |
254 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||| || ||||| |||||| |||||||||||||| |
|
|
| T |
38795083 |
gtgaaataacctggattgatactcttggttgcaaggactttggatgtaaaatggacattgaaatcaacagaaagcatagtgacagtac |
38795170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 34720078 - 34720202
Alignment:
| Q |
17 |
actagagacatggatttagtcgcatatgaatcccatggattggttgacagaagagagagagcacaaataaagtcttgttcatcatttgtatcagaaacgg |
116 |
Q |
| |
|
|||||||| | |||||| || |||||||||||||| ||| ||||||||||||||||| ||||||| |||| |||| | ||| ||||||||| | | |
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|
| T |
34720078 |
actagagaaacggatttggttgcatatgaatcccacggactggttgacagaagagaggaagcacaagtaaaatcttccgtagcatctgtatcagagaagc |
34720177 |
T |
|
| Q |
117 |
taatgaaatcttctacacctgcaaa |
141 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
34720178 |
taatgaaatcttctacacctgcaaa |
34720202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 38794931 - 38795000
Alignment:
| Q |
18 |
ctagagacatggatttagtcgcatatgaatcccatggattggttgacagaagagagagagcacaaataaa |
87 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||| |||||||||| || ||||||||| |||| |
|
|
| T |
38794931 |
ctagagacatggatttaatcgcatatgaatcccacggattgattgacagaagtgaaagagcacaagtaaa |
38795000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 38496557 - 38496516
Alignment:
| Q |
39 |
catatgaatcccatggattggttgacagaagagagagagcac |
80 |
Q |
| |
|
|||||| | |||||| |||||||||||||||||||||||||| |
|
|
| T |
38496557 |
catatgcaccccatgaattggttgacagaagagagagagcac |
38496516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 372
Target Start/End: Complemental strand, 38496163 - 38496083
Alignment:
| Q |
292 |
aaaatcttttgcttgggggagcttgctgttctgcatgttttgccaggctaaatttgtagcagtctttgaattagcaaatgg |
372 |
Q |
| |
|
||||||||| | |||||||||||||||||| |||||| | |||| |||||||||| || | |||||| | ||||||||| |
|
|
| T |
38496163 |
aaaatctttggtttgggggagcttgctgttgggcatgtctggccatgctaaatttgaagtattctttggaaaagcaaatgg |
38496083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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