View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_low_12 (Length: 524)
Name: NF11940_low_12
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 139 - 506
Target Start/End: Complemental strand, 8028520 - 8028147
Alignment:
| Q |
139 |
ttatgattgattaattctctaagcatgttttttacaaaaccattggtaggaatttgctagaaatttttattcttttttatgtattatacccacgtatcca |
238 |
Q |
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| T |
8028520 |
ttataattgattatttctctaagcatgttttt-acaaaaccattggtagtaattcactagaaatttttattcttttttatgtattatacccacgtatccg |
8028422 |
T |
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| Q |
239 |
taccttcannnnnnnnnnaaatttaacgta-------ttacgtaccgatatccgtactcatcataggtcaaaattcaatcggtcgagaaccataatttaa |
331 |
Q |
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| T |
8028421 |
taccttcatttttttt--aaatttaacgtacaccgtattacgtatcggtacccgtactcatcataggtcataattcaattggtcgagaaccataatttaa |
8028324 |
T |
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| Q |
332 |
tttgccatgacagtttctgcactcacttttaaggcacacagaaaattagaacaaacacgatattaaaaaattgagctatagtttattttctagatcatcc |
431 |
Q |
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| T |
8028323 |
ttttccatgacagtttctgcactcacttttaaggcacacagaaaattagaacaaacacgatattaaaaaattgagctatagtttattttctagatcatcc |
8028224 |
T |
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| Q |
432 |
aaggtatggcctcatccttaacgtaatgctcttcataaggctgaacatatagaatg--tataatcaacataaatcat |
506 |
Q |
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| T |
8028223 |
aaggtatggcttcatccttaacgtaatgctcttcataaggctgaacatatagaatgtatataatcaacataaatcat |
8028147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 413 - 502
Target Start/End: Complemental strand, 8018645 - 8018556
Alignment:
| Q |
413 |
tttattttctagatcatccaaggtatggcctcatccttaacgtaatgctcttcataaggctgaacatatagaatgtataatcaacataaa |
502 |
Q |
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| T |
8018645 |
tttattttctggatcatccaaggtatggcctcatccttagtgtaatgctcttcaaaaggctgaacatatagaatgtataatcaacataaa |
8018556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 303 - 394
Target Start/End: Complemental strand, 8018974 - 8018883
Alignment:
| Q |
303 |
aattcaatcggtcgagaaccataatttaatttgccatgacagtttctgcactcacttttaaggcacacagaaaattagaacaaacacgatat |
394 |
Q |
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| T |
8018974 |
aattcaattgatcaagaaccataatttaatttgccatgacagtttctgcactcactttcaaggcacacaacaaattagaacaaacactatat |
8018883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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