View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_low_13 (Length: 522)
Name: NF11940_low_13
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 484; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 8 - 507
Target Start/End: Original strand, 2096527 - 2097026
Alignment:
| Q |
8 |
cagcacagagcaaaggacctgctgaagctagaggatagcttttaggtatcaagaagcaatacctgcacatgcaagaccatatataaaagaagttatggac |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2096527 |
cagcacagagcaaaggacctgctgaagctagaggatagcttttaggtatcaagaagcaatacctgcacatgcaagaccatatataaaagaagttatgaac |
2096626 |
T |
|
| Q |
108 |
tgaaattacaacctccattattacgaaatcaaataagtgtttttagtgcttataataaatttcagcaagagaaggtcttgtaaaaacgcataaaacataa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2096627 |
tgaaattacaacctccattattacgaaatcaaataagtgtttttagtgcttataataaatttaagcaagagaaggtcttgtaaaaacgcataaaacataa |
2096726 |
T |
|
| Q |
208 |
tcagaacgaagccatctattaagtttacctttcatgtactacaatggaagtggagtatcctccttttgtaattgtgccatcataatcaacaccattaaag |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2096727 |
tcagaacgaagccatctattaagtttacctttcatgtactacaatggaagtggagtatcctccttttgtaattgtgccatcataatcaacaccattaaag |
2096826 |
T |
|
| Q |
308 |
gtgtaaactgatcccttgacacaatgaacttctaatcgatcgttacaatactcacattccctgcatgagttgatgtaagtccccactccgacatggtcac |
407 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2096827 |
gtgtaaactgatcccttgacacaatgaacttcgaatcgatcgttacaatactcacattccctgcatgagttgatgtaagtccccactccgacatggtcac |
2096926 |
T |
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| Q |
408 |
caaccttgaaacgctggacattgggaccaacctttgccacaaccccagcaatctcgtgtctgataagaaaaaaggaaaacacagataaataaactgatgt |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2096927 |
caaccttgaaacgctggacattgggaccaacctttgccacaaccccagcaatctcgtgtctgataagaaaaaaggaaaacacagataaataaacttatgt |
2097026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 8 - 177
Target Start/End: Original strand, 2102739 - 2102908
Alignment:
| Q |
8 |
cagcacagagcaaaggacctgctgaagctagaggatagcttttaggtatcaagaagcaatacctgcacatgcaagaccatatataaaagaagttatggac |
107 |
Q |
| |
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||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |
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| T |
2102739 |
cagcacaaagcaaaggacctgccgaagctaaaggatagcttttaggtatcaagaagcaatacctgcatatgcaagaccaaatataaaagaagttatgaac |
2102838 |
T |
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| Q |
108 |
tgaaattacaacctccattattacgaaatcaaataagtgtttttagtgcttataataaatttcagcaaga |
177 |
Q |
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|||||||||||| ||||| ||| ||||||||| | || ||||||||||| ||||||||||||||||||| |
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| T |
2102839 |
tgaaattacaacttccatcgttatgaaatcaaagatgtttttttagtgctcataataaatttcagcaaga |
2102908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 204 - 335
Target Start/End: Original strand, 2102908 - 2103039
Alignment:
| Q |
204 |
ataatcagaacgaagccatctattaagtttacctttcatgtactacaatggaagtggagtatcctccttttgtaattgtgccatcataatcaacaccatt |
303 |
Q |
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||||||||||| ||||| ||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
2102908 |
ataatcagaaccaagccctctattaagtttacctttcatttactacaattgaagtcgagtatcctccttttgtaattgtaccatcataatcaacacaatt |
2103007 |
T |
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| Q |
304 |
aaaggtgtaaactgatcccttgacacaatgaa |
335 |
Q |
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|||||||||||||||||||||| ||||||||| |
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| T |
2103008 |
aaaggtgtaaactgatcccttggcacaatgaa |
2103039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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