View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_low_15 (Length: 483)
Name: NF11940_low_15
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 18515709 - 18516172
Alignment:
| Q |
1 |
atggtgttccaggacttacacacgcacttcattcgtatcagatctttcacttcaagaaacgtcaggaattcgatgataacatcatcggggaggaagatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18515709 |
atggtgttccaggacttacacacgcacttcattcgtatcagatctttcacttcaagaaacgtcaggaattcgatgataacatcatcggggaggaagatta |
18515808 |
T |
|
| Q |
101 |
ccgctgccgatggatccgcagcactgggcggaggatgaggacggatattcatcacaacgaacagcaccacagtagttcaacttcaagaaagtgtaaccct |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
18515809 |
ccactgccgatggatccgcagcactgggcggaggatgaggaaggatattcatcacaacgaacagcaccacagcagttcaacttcaagaaagtgtaaccct |
18515908 |
T |
|
| Q |
201 |
aaaagttattaacaaattcctgaaaaaatgcatgaaaataacttgttaatttgatacatcatttgaaacacgcagcagatgagagaaacaacttatgatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
18515909 |
aaaagttattaacaaattcctgaaaaaatgcatgaaaataacttgttaatttgatacatcatttgaaacacgcagcagatgagagaaacagcttatgatc |
18516008 |
T |
|
| Q |
301 |
acttttagcttattacttgtagaactgtttaacagatctttgggaaatagcttatgatatgcccataagttattttcatcttatttttataacctctcga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18516009 |
acttttagcttattacttgtagaactgtttaacagatctttgggaaatagcttatgatatgcccataagttattttcatcttatttttataacctctcga |
18516108 |
T |
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| Q |
401 |
aggtagcttaataaaatagcttacatgaaagcaatttgattttataatttgtttaatagaaatt |
464 |
Q |
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| T |
18516109 |
aggtagcttaataaaatagcttacatgaaagcaatttgattttataatttgtttaatagaaatt |
18516172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 14514076 - 14513912
Alignment:
| Q |
3 |
ggtgttccaggacttacacacgcacttcattcgtatcagatctttcacttcaagaaacgtcaggaattcgatgataacatcatcggggaggaagattacc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||| | |||||||| | |||||| || |||||||||| ||||| | |
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| T |
14514076 |
ggtgttccaggacttacacacgcacttcatccacatcagatctttcacttcaagaaatgagaggaattcaaagataacttcgtcggggaggaggattaac |
14513977 |
T |
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| Q |
103 |
gctgccgatgga---tccgcagcactgggcggaggatgaggacggatattcatcacaacgaacag |
164 |
Q |
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| T |
14513976 |
accgccggtggaccctccgctgcaatgagcggaggaggaacagggatattcatcacaacaaacag |
14513912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 11924668 - 11924616
Alignment:
| Q |
345 |
aaatagcttatgatatgcccataagttattttcatcttatttttataacctct |
397 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11924668 |
aaataggttatgatatgcccataagttattttcatcttatttttataaactct |
11924616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 410
Target Start/End: Complemental strand, 23819165 - 23819104
Alignment:
| Q |
349 |
agcttatgatatgcccataagttattttcatcttatttttataacctctcgaaggtagctta |
410 |
Q |
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||||||||| ||| ||||||||| |||||||||||||| ||||| |||| ||| ||||||| |
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| T |
23819165 |
agcttatgacatgtccataagttgttttcatcttatttctataagctcttcaagatagctta |
23819104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 398
Target Start/End: Complemental strand, 4006788 - 4006741
Alignment:
| Q |
351 |
cttatgatatgcccataagttattttcatcttatttttataacctctc |
398 |
Q |
| |
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|||| |||||| |||||||||||||||| |||||||| |||||||||| |
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| T |
4006788 |
cttacgatatgtccataagttattttcagcttattttcataacctctc |
4006741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 41957439 - 41957488
Alignment:
| Q |
343 |
ggaaatagcttatgatatgcccataagttattttcatcttatttttataa |
392 |
Q |
| |
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||||| ||||||||| ||| ||||||||| ||||||||||||||| |||| |
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| T |
41957439 |
ggaaacagcttatgacatgtccataagttgttttcatcttattttcataa |
41957488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 33965476 - 33965520
Alignment:
| Q |
343 |
ggaaatagcttatgatatgcccataagttattttcatcttatttt |
387 |
Q |
| |
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||||||||| ||||| |||||||||||||||||||| ||| |||| |
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| T |
33965476 |
ggaaatagcatatgacatgcccataagttattttcagcttttttt |
33965520 |
T |
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